Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 1.2e-32 142.5 68 100.0
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 3.4e-19 97.8 59 74.6
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 9.7e-19 96.3 59 72.9
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.2e-16 89.4 53 73.6
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.2e-16 89.4 51 78.4
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 2.0e-16 88.6 53 79.2
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 7.7e-16 86.7 55 67.3
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.0e-15 86.3 50 76.0
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.3e-15 85.9 55 65.5
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 2.2e-15 85.1 54 68.5
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 2.2e-15 85.1 62 61.3
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 2.9e-15 84.7 56 67.9
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 2.9e-15 84.7 54 74.1
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.9e-14 82.0 50 76.0
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.9e-14 82.0 50 76.0
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 1.9e-14 82.0 55 69.1
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.5e-14 81.6 62 64.5
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.5e-14 81.6 62 64.5
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 2.5e-14 81.6 53 69.8
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 2.5e-14 81.6 50 74.0
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 2.5e-14 81.6 55 69.1
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.2e-14 81.3 57 70.2
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 5.5e-14 80.5 50 70.0
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.5e-14 80.5 62 62.9
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 5.5e-14 80.5 53 69.8
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.2e-14 80.1 50 74.0
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 9.4e-14 79.7 55 69.1
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 9.4e-14 79.7 50 76.0
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.2e-13 79.3 50 76.0
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.6e-13 79.0 63 55.6
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 2.1e-13 78.6 43 76.7
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.1e-13 78.6 55 69.1
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.1e-13 78.6 55 69.1
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 2.7e-13 78.2 50 74.0
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 2.7e-13 78.2 50 72.0
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 2.7e-13 78.2 50 72.0
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 2.7e-13 78.2 59 64.4
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.6e-13 77.8 50 72.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.6e-13 77.8 55 67.3
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 3.6e-13 77.8 50 70.0
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 4.7e-13 77.4 50 72.0
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 4.7e-13 77.4 42 81.0
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 6.1e-13 77.0 50 72.0
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 6.1e-13 77.0 50 74.0
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 8.0e-13 76.6 50 74.0
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 8.0e-13 76.6 60 60.0
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 8.0e-13 76.6 60 60.0
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 8.0e-13 76.6 51 68.6
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.0e-12 76.3 60 60.0
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 1.0e-12 76.3 50 72.0
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.0e-12 76.3 55 65.5
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.4e-12 75.9 43 79.1
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 1.4e-12 75.9 48 75.0
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.8e-12 75.5 43 79.1
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.8e-12 75.5 60 58.3
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.8e-12 75.5 55 63.6
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.8e-12 75.5 51 68.6
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.3e-12 75.1 55 61.8
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.3e-12 75.1 55 61.8
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 2.3e-12 75.1 43 76.7
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 2.3e-12 75.1 43 76.7
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.3e-12 75.1 43 76.7
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 2.3e-12 75.1 43 76.7
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 2.3e-12 75.1 43 76.7
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.3e-12 75.1 43 76.7
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 2.3e-12 75.1 55 61.8
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 3.0e-12 74.7 43 76.7
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 3.0e-12 74.7 56 67.9
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 3.0e-12 74.7 50 70.0
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.0e-12 74.3 39 82.1
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.0e-12 74.3 51 66.7
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 4.0e-12 74.3 51 66.7
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 5.2e-12 73.9 55 63.6
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 5.2e-12 73.9 55 63.6
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 5.2e-12 73.9 55 61.8
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 5.2e-12 73.9 43 76.7
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 6.8e-12 73.6 55 61.8
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 6.8e-12 73.6 71 53.5
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.8e-12 73.6 43 76.7
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 6.8e-12 73.6 50 68.0
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 6.8e-12 73.6 50 68.0
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.2e-11 72.8 53 66.0
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 4.4e-11 70.9 39 76.9
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.4e-11 70.9 64 57.8
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 7.5e-11 70.1 42 76.2
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.2e-10 68.6 43 72.1
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 2.2e-10 68.6 39 79.5
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 3.7e-10 67.8 53 62.3
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 8.3e-10 66.6 39 76.9
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 8.3e-10 66.6 55 58.2
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.1e-09 66.2 55 56.4
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 1.1e-09 66.2 51 64.7
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 1.8e-09 65.5 39 79.5
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.8e-09 65.5 61 49.2
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.1e-09 64.7 60 53.3
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.1e-09 63.2 34 79.4
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 3.5e-08 61.2 39 74.4
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 4.5e-08 60.8 31 80.6
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 7.7e-08 60.1 38 73.7
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.0e-07 59.7 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.3e-07 59.3 28 89.3
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.8e-07 57.8 31 83.9
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.0e-07 57.4 40 67.5
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 6.6e-07 57.0 31 77.4
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 6.6e-07 57.0 51 52.9
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.9e-06 55.5 31 80.6
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 4.2e-06 54.3 32 75.0


User provided reference genes

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