Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3691 Ceratophyllum demersum HOM05D000639 ORTHO05D007519 2.0e-93 345.9 194 100.0
CDE02G3921 Ceratophyllum demersum HOM05D000639 ORTHO05D007519 4.4e-64 248.4 302 53.3
PSO339G5515 Papaver somniferum HOM05D000639 ORTHO05D007519 6.2e-34 148.3 254 34.6
GSVIVG01036648001 Vitis vinifera HOM05D000639 ORTHO05D007519 2.6e-32 142.9 244 34.8
TAR633G0611 Trochodendron aralioides HOM05D000639 ORTHO05D007519 3.7e-31 139.0 274 33.6
Carub.0003s1163 Capsella rubella HOM05D000639 ORTHO05D007519 4.9e-31 138.7 241 36.1
TAR633G2471 Trochodendron aralioides HOM05D000639 ORTHO05D007519 4.9e-31 138.7 275 33.5
BcaB04g18688 Brassica carinata HOM05D000639 ORTHO05D007519 7.1e-30 134.8 226 34.5
C05p55520 Brassica napus HOM05D000639 ORTHO05D007519 9.2e-30 134.4 237 33.3
CARHR086820 Cardamine hirsuta HOM05D000639 ORTHO05D007519 9.2e-30 134.4 247 34.8
A03p37560 Brassica napus HOM05D000639 ORTHO05D007519 1.2e-29 134.0 222 37.4
MBI19_g36133_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D007519 1.6e-29 133.7 275 30.5
C03p45550 Brassica napus HOM05D000639 ORTHO05D007519 2.1e-29 133.3 222 36.5
BolC5t34218H Brassica oleracea HOM05D000639 ORTHO05D007519 2.7e-29 132.9 237 33.3
AT3G12270 Arabidopsis thaliana HOM05D000639 ORTHO05D007519 4.6e-29 132.1 241 36.1
BcaC01g04056 Brassica carinata HOM05D000639 ORTHO05D007519 4.6e-29 132.1 221 36.2
PSO384G1239 Papaver somniferum HOM05D000639 ORTHO05D007519 4.6e-29 132.1 254 32.3
Thecc.10G145300 Theobroma cacao HOM05D000639 ORTHO05D007519 4.6e-29 132.1 268 32.8
TPR.G1436 Trifolium pratense HOM05D000639 ORTHO05D007519 6.0e-29 131.7 258 35.3
ATR1096G043 Amborella trichopoda HOM05D000639 ORTHO05D007519 7.8e-29 131.3 255 32.9
AL3G23930 Arabidopsis lyrata HOM05D000639 ORTHO05D007519 7.8e-29 131.3 241 33.6
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 7.8e-29 131.3 214 37.9
Duzib128G0348 Durio zibethinus HOM05D000639 ORTHO05D007519 1.0e-28 131.0 267 34.1
Aqoxy1G00391 Aquilegia oxysepala HOM05D000639 ORTHO05D007519 1.7e-28 130.2 265 30.9
Medtr3g013960 Medicago truncatula HOM05D000639 ORTHO05D007519 2.3e-28 129.8 258 34.5
Glyma.11G157700 Glycine max HOM05D000639 ORTHO05D007519 3.0e-28 129.4 258 32.6
Aa31LG3G6490 Aethionema arabicum HOM05D000639 ORTHO05D007519 3.9e-28 129.0 250 34.0
A05p37090 Brassica napus HOM05D000639 ORTHO05D007519 5.1e-28 128.6 243 34.6
ECA234G1492 Erigeron canadensis HOM05D004621 ORTHO05D005817 5.1e-28 128.6 242 33.1
TAR636G2666 Trochodendron aralioides HOM05D000639 ORTHO05D007519 5.1e-28 128.6 275 30.9
CsaV3_5G036920 Cucumis sativus L. HOM05D000639 ORTHO05D007519 6.6e-28 128.3 245 30.6
Gorai.009G298900 Gossypium raimondii HOM05D000639 ORTHO05D007519 8.6e-28 127.9 267 32.2
Phvul.005G024700 Phaseolus vulgaris HOM05D000639 ORTHO05D007519 8.6e-28 127.9 242 34.3
SGA_v2.0_scaffold43G16282 Striga asiatica HOM05D000639 ORTHO05D007519 8.6e-28 127.9 260 31.2
TWI15G0515 Tripterygium wilfordii HOM05D000639 ORTHO05D007519 8.6e-28 127.9 265 31.7
Cfa010945 Carpinus fangiana HOM05D000639 ORTHO05D007519 1.1e-27 127.5 270 31.1
Dinv32012 Davidia involucrata HOM05D000639 ORTHO05D007519 1.1e-27 127.5 269 31.2
Thhalv10020338m.g Eutrema salsugineum HOM05D000639 ORTHO05D007519 1.1e-27 127.5 248 33.9
BraA05t22506Z Brassica rapa HOM05D000639 ORTHO05D007519 1.5e-27 127.1 244 34.8
Manes.04G156800 Manihot esculenta HOM05D000639 ORTHO05D007519 1.9e-27 126.7 278 35.3
Nn7g36776 Nelumbo nucifera HOM05D000639 ORTHO05D007519 1.9e-27 126.7 276 31.9
Actinidia10146 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.5e-27 126.3 255 32.9
C09p27390 Brassica napus HOM05D000639 ORTHO05D007519 2.5e-27 126.3 244 33.2
Sc10g0004550 Simmondsia chinensis HOM05D000639 ORTHO05D007519 2.5e-27 126.3 263 32.3
Gohir.A05G283300 Gossypium hirsutum HOM05D000639 ORTHO05D007519 3.3e-27 125.9 267 31.5
Gohir.D05G284300 Gossypium hirsutum HOM05D000639 ORTHO05D007519 3.3e-27 125.9 266 32.0
Potri.001G030200 Populus trichocarpa HOM05D000639 ORTHO05D007519 3.3e-27 125.9 266 33.1
CSS0034880 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D007519 4.3e-27 125.6 268 32.5
CiPaw.13G015500 Carya illinoinensis HOM05D000639 ORTHO05D007519 5.6e-27 125.2 285 29.5
Psat5g222040 Pisum sativum HOM05D000639 ORTHO05D007519 5.6e-27 125.2 270 32.6
VMungo1080G1346 Vigna mungo HOM05D000639 ORTHO05D007519 9.5e-27 124.4 264 32.2
BraA03t12910Z Brassica rapa HOM05D000639 ORTHO05D007519 1.6e-26 123.6 243 34.6
MELO3C012491.2 Cucumis melo HOM05D000639 ORTHO05D007519 1.6e-26 123.6 245 29.8
arahy.Tifrunner.gnm1.ann1.H9Y2LD Arachis hypogaea HOM05D000639 ORTHO05D007519 2.1e-26 123.2 265 30.9
Ciclev10000650m.g Citrus clementina HOM05D000639 ORTHO05D007519 2.1e-26 123.2 265 30.6
Glyma.04G133900 Glycine max HOM05D000639 ORTHO05D007519 2.1e-26 123.2 263 31.6
arahy.Tifrunner.gnm1.ann1.P73KK2 Arachis hypogaea HOM05D000639 ORTHO05D007519 2.8e-26 122.9 265 30.9
QL04p019592 Quercus lobata HOM05D000639 ORTHO05D007519 3.6e-26 122.5 254 31.5
Sp3g10490 Schrenkiella parvula HOM05D000639 ORTHO05D007519 3.6e-26 122.5 254 31.5
Cpa.g.sc169.35 Carica papaya HOM05D000639 ORTHO05D007519 4.7e-26 122.1 270 29.3
vmacro13765 Vaccinium macrocarpon HOM05D000639 ORTHO05D007519 4.7e-26 122.1 266 32.0
MSTRG.16980 Avicennia marina HOM05D000639 ORTHO05D007519 8.1e-26 121.3 268 32.5
Haze_03001 Corylus avellana HOM05D000639 ORTHO05D007519 8.1e-26 121.3 270 30.4
COL.COLO4_20723 Corchorus olitorius HOM05D000639 ORTHO05D007519 1.4e-25 120.6 271 31.7
Lalb_Chr25g0281741 Lupinus albus HOM05D000639 ORTHO05D007519 1.4e-25 120.6 269 32.3
RcHm_v2.0_Chr1g0326421 Rosa chinensis HOM05D000639 ORTHO05D007519 1.4e-25 120.6 271 31.7
FAN03G1836 Fragaria x ananassa HOM05D000639 ORTHO05D007519 2.3e-25 119.8 271 33.2
MD07G1046100 Malus domestica HOM05D000639 ORTHO05D007519 2.3e-25 119.8 270 30.7
ClCG05G026980 Citrullus lanatus HOM05D000639 ORTHO05D007519 3.1e-25 119.4 245 31.8
Prupe.2G042600 Prunus persica HOM05D000639 ORTHO05D007519 3.1e-25 119.4 271 31.4
THA.LOC104799324 Tarenaya hassleriana HOM05D000639 ORTHO05D007519 3.1e-25 119.4 267 30.0
MBI19_g20786_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D007519 4.0e-25 119.0 273 29.7
FAN10G4100 Fragaria x ananassa HOM05D000639 ORTHO05D007519 5.2e-25 118.6 271 32.8
BolC3t16832H Brassica oleracea HOM05D000639 ORTHO05D007519 6.8e-25 118.2 245 33.1
Sabra01G0021700 Salix brachista HOM05D000639 ORTHO05D007519 8.9e-25 117.9 269 31.6
FvH4_7g03650 Fragaria vesca HOM05D000639 ORTHO05D007519 2.0e-24 116.7 271 32.8
FAN06G0539 Fragaria x ananassa HOM05D000639 ORTHO05D007519 2.0e-24 116.7 271 32.8
SalBow6G5029 Salvia bowleyana HOM05D000639 ORTHO05D007519 2.0e-24 116.7 286 29.7
Migut.N01856 Erythranthe guttata HOM05D000639 ORTHO05D007519 5.8e-24 115.2 257 30.0
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 7.6e-24 114.8 265 29.8
Cc03_g04310 Coffea canephora HOM05D000639 ORTHO05D007519 9.9e-24 114.4 266 30.5
HanXRQChr10g0309811 Helianthus annuus HOM05D000639 ORTHO05D007519 9.9e-24 114.4 243 30.0
Solyc01g096550.3 Solanum lycopersicum HOM05D000639 ORTHO05D007519 1.3e-23 114.0 259 29.7
Sopen01g040280 Solanum pennellii HOM05D000639 ORTHO05D007519 1.3e-23 114.0 259 29.3
Nitab4.5_0005420g0030 Nicotiana tabacum HOM05D000639 ORTHO05D007519 2.2e-23 113.2 258 30.2
CAN.G134.14 Capsicum annuum HOM05D000639 ORTHO05D007519 2.9e-23 112.8 259 29.7
Peaxi162Scf00082g00019 Petunia axillaris HOM05D000639 ORTHO05D007519 2.9e-23 112.8 256 30.5
PGR031G3760 Punica granatum HOM05D000639 ORTHO05D007519 2.9e-23 112.8 269 28.6
Ah.10g029870 Amaranthus hybridus HOM05D000639 ORTHO05D007519 3.8e-23 112.5 265 28.3
DCAR_029712 Daucus carota HOM05D000639 ORTHO05D007519 8.4e-23 111.3 268 30.6
PGSC0003DMG401003285 Solanum tuberosum HOM05D000639 ORTHO05D007519 1.1e-22 110.9 259 29.0
SGA_v2.0_scaffold232G43485 Striga asiatica HOM05D000639 ORTHO05D007519 1.4e-22 110.5 262 28.6
Hund13389 Selenicereus undatus HOM05D000639 ORTHO05D007519 1.9e-22 110.2 270 30.0
EL10Ac2g02719 Beta vulgaris HOM05D000639 ORTHO05D007519 2.4e-22 109.8 261 30.3
CANSAT56G3383 Cannabis sativa HOM05D000639 ORTHO05D007519 2.4e-22 109.8 263 31.2
AUR62032569 Chenopodium quinoa HOM05D000639 ORTHO05D007519 2.4e-22 109.8 268 29.1
Sed0017460 Sechium edule HOM05D000639 ORTHO05D007519 3.2e-22 109.4 256 28.9
HPP92_001699 Vanilla planifolia HOM05D000639 ORTHO05D007519 3.2e-22 109.4 268 26.5
Nitab4.5_0002838g0160 Nicotiana tabacum HOM05D000639 ORTHO05D007519 4.1e-22 109.0 243 30.9
unitig_0.g2299 Utricularia gibba HOM05D000639 ORTHO05D007519 4.1e-22 109.0 248 30.2
AUR62031686 Chenopodium quinoa HOM05D000639 ORTHO05D007519 1.2e-21 107.5 269 29.0
SEGI_34036 Sequoiadendron giganteum HOM05D000639 ORTHO05D007519 7.8e-21 104.8 294 26.2
Zm00001eb307260 Zea mays HOM05D000639 ORTHO05D007519 1.7e-20 103.6 250 28.8
Os07g0640000 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D007519 1.2e-18 97.4 250 26.4
Lj3g0017509 Lotus japonicus HOM05D000639 ORTHO05D007519 3.4e-16 89.4 73 58.9
Eucgr.G03214 Eucalyptus grandis HOM05D000639 ORTHO05D007519 4.4e-16 89.0 73 54.8
Oeu013072.1 Olea europaea HOM05D000639 ORTHO05D007519 7.6e-16 88.2 74 56.8
Oeu013078.1 Olea europaea HOM05D000639 ORTHO05D007519 9.9e-16 87.8 74 56.8
Ca_12955_v3 Cicer arietinum L. HOM05D000639 ORTHO05D007519 4.9e-15 85.5 63 65.1
Rhsim07G0068700 Rhododendron simsii HOM05D000639 ORTHO05D007519 4.9e-15 85.5 69 56.5
Pp3c22_9680 Physcomitrium patens HOM05D000639 ORTHO05D007519 1.4e-14 84.0 83 44.6
BcaC04g21798 Brassica carinata HOM05D000639 ORTHO05D007519 1.9e-14 83.6 106 41.5
Lj9A657G26 Lonicera japonica HOM05D000639 ORTHO05D007519 1.0e-12 77.8 72 51.4
Mapoly0032s0165 Marchantia polymorpha HOM05D000639 ORTHO05D007519 1.0e-12 77.8 70 51.4
Actinidia01517 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.3e-12 76.6 104 42.3
SMO111G0077 Selaginella moellendorffii HOM05D000639 ORTHO05D007519 6.6e-12 75.1 70 48.6
CAN.G997.6 Capsicum annuum HOM05D000639 ORTHO05D007519 2.8e-10 69.7 55 56.4
Cre16.g685900 Chlamydomonas reinhardtii HOM05D000639 ORTHO05D007519 1.1e-09 67.8 56 55.4
PRCOL_00006047 Prasinoderma coloniale HOM05D000639 ORTHO05D007519 3.1e-09 66.2 53 56.6
ATR0559G017 Amborella trichopoda HOM05D000639 ORTHO05D007519 9.0e-09 64.7 115 33.9
CBR_g3764 Chara braunii HOM05D000639 ORTHO05D007519 5.8e-08 62.0 55 49.1
Glyma.20G101000 Glycine max HOM05D000639 ORTHO05D006731 1.3e-07 60.8 74 39.2
Haze_26970 Corylus avellana HOM05D000639 ORTHO05D003485 1.1e-06 57.8 71 43.7
RcHm_v2.0_Chr1g0326461 Rosa chinensis HOM05D000639 ORTHO05D007519 1.1e-06 57.8 271 23.2
Os04g0677066 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D006731 3.2e-06 56.2 50 48.0
Cre03.g172550 Chlamydomonas reinhardtii HOM05D000639 ORTHO05D003485 4.2e-06 55.8 50 50.0
Glyma.15G097800 Glycine max HOM05D000639 ORTHO05D006731 4.2e-06 55.8 53 43.4
Gohir.D04G149300 Gossypium hirsutum HOM05D000639 ORTHO05D006731 7.1e-06 55.1 50 46.0
Gorai.012G135800 Gossypium raimondii HOM05D000639 ORTHO05D006731 7.1e-06 55.1 50 46.0
Pp3c4_1810 Physcomitrium patens HOM05D000639 ORTHO05D006731 7.1e-06 55.1 50 50.0
Gohir.A04G109456 Gossypium hirsutum HOM05D000639 ORTHO05D006731 9.3e-06 54.7 50 46.0
Lalb_Chr17g0337691 Lupinus albus HOM05D000639 ORTHO05D006731 9.3e-06 54.7 50 46.0


User provided reference genes

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