Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.1e-154 548.5 292 100.0
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.5e-129 466.5 294 88.1
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.0e-64 249.6 283 48.8
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 9.5e-63 244.6 298 52.3
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.6e-62 242.7 272 49.3
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.2e-62 241.9 284 51.4
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 8.1e-62 241.5 261 51.0
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.3e-61 240.0 285 50.9
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 2.3e-61 240.0 285 50.9
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 4.0e-61 239.2 272 52.6
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.2e-60 237.7 280 51.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 9.8e-60 234.6 290 47.6
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.2e-59 233.4 280 49.6
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.4e-58 229.9 288 49.3
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.4e-58 229.9 287 46.7
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 3.2e-58 229.6 292 46.9
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 2.1e-57 226.9 298 47.7
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.1e-57 226.9 294 46.6
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.7e-57 226.5 254 51.2
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 3.5e-57 226.1 263 47.5
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.0e-56 224.6 262 48.9
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.3e-56 224.2 262 53.4
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.3e-56 224.2 299 48.2
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.3e-56 224.2 302 48.7
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.7e-56 223.8 291 48.1
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.7e-56 223.8 262 48.9
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 2.3e-56 223.4 297 47.1
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 3.0e-56 223.0 298 46.0
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.0e-56 223.0 280 50.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 5.1e-56 222.2 299 45.8
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 5.1e-56 222.2 289 46.7
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 6.6e-56 221.9 294 45.6
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 8.6e-56 221.5 283 50.5
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.1e-55 221.1 280 49.3
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.9e-55 220.3 286 49.3
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.9e-55 220.3 287 44.9
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 3.3e-55 219.5 291 46.4
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 9.5e-55 218.0 299 44.8
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.6e-54 217.2 280 51.1
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 2.1e-54 216.9 278 48.6
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 2.1e-54 216.9 296 45.9
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.8e-54 216.5 254 53.5
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.3e-53 213.4 290 48.3
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 5.2e-53 212.2 285 44.9
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.2e-52 211.1 292 49.0
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.5e-52 210.7 303 45.5
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.5e-52 210.7 267 49.1
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.0e-52 210.3 287 47.0
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.0e-52 210.3 292 49.0
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.4e-52 209.5 261 50.6
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.4e-52 209.1 255 47.5
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 4.4e-52 209.1 275 46.5
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.4e-52 209.1 265 48.3
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 5.8e-52 208.8 264 50.0
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 7.6e-52 208.4 288 46.2
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 9.9e-52 208.0 264 46.2
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 9.9e-52 208.0 283 46.3
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 9.9e-52 208.0 295 47.5
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.3e-51 207.6 268 45.5
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.3e-51 207.6 269 50.6
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 2.2e-51 206.8 312 43.3
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.8e-51 206.1 263 48.3
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 4.9e-51 205.7 301 45.8
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 6.4e-51 205.3 293 43.0
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 8.4e-51 204.9 242 49.6
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.1e-50 204.5 298 43.6
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.9e-50 203.8 263 52.5
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.9e-50 203.8 278 43.2
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.9e-50 203.8 274 47.1
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 2.4e-50 203.4 285 45.6
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 3.2e-50 203.0 287 50.2
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 4.1e-50 202.6 286 45.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 5.4e-50 202.2 256 49.6
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.2e-49 201.1 284 46.5
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.2e-49 201.1 284 46.5
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.6e-49 200.7 261 49.0
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.1e-49 200.3 298 43.6
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.7e-49 199.9 287 44.9
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.5e-49 199.5 282 44.3
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 3.5e-49 199.5 290 44.1
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 4.6e-49 199.1 295 46.1
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.0e-48 198.0 236 50.8
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 1.0e-48 198.0 296 45.9
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.0e-48 196.4 298 46.0
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 3.0e-48 196.4 248 45.2
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.5e-47 194.1 307 47.2
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.3e-47 193.0 268 48.9
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 9.6e-47 191.4 269 48.3
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 9.6e-47 191.4 266 45.9
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.1e-46 190.3 267 45.3
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.6e-46 189.5 284 46.5
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 6.2e-46 188.7 291 45.4
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-45 188.0 275 47.6
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.1e-45 188.0 303 45.9
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.1e-45 188.0 288 44.8
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.0e-45 186.0 290 46.2
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 2.0e-44 183.7 387 38.2
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 7.6e-44 181.8 224 52.2
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 2.9e-43 179.9 295 45.1
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 2.9e-43 179.9 295 45.1
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 4.9e-43 179.1 266 48.5
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.1e-42 177.9 285 44.6
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-42 176.8 291 44.7
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.2e-42 176.0 246 49.6
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.6e-41 174.1 288 46.9
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 6.0e-41 172.2 245 49.8
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 6.0e-41 172.2 245 49.8
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 7.8e-41 171.8 278 42.8
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 1.7e-40 170.6 254 42.1
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 2.3e-40 170.2 244 50.0
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 6.6e-40 168.7 240 48.8
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 2.5e-39 166.8 165 57.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.3e-38 164.5 233 51.1
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 6.2e-38 162.2 226 45.1
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 3.1e-37 159.8 292 41.8
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.5e-36 157.5 252 43.3
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 5.8e-36 155.6 302 37.1
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 1.7e-35 154.1 284 35.2
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 4.9e-35 152.5 290 39.3
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 4.2e-34 149.4 245 43.3
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 4.2e-34 149.4 247 42.1
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.7e-33 146.7 273 38.1
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.5e-33 146.4 295 37.3
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 7.9e-33 145.2 300 35.7
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 6.7e-32 142.1 153 49.0
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 3.3e-31 139.8 289 34.3
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-29 134.8 158 50.6
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 8.4e-27 125.2 287 36.9
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 5.5e-26 122.5 245 35.9
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.3e-22 111.3 169 40.2
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.4e-21 107.8 85 63.5
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 7.6e-20 102.1 164 49.4
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 8.4e-19 98.6 222 32.9
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-14 84.3 207 33.3
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-12 78.2 269 27.9
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 7.6e-12 75.5 57 56.1
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.9e-10 70.9 106 35.8
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.6e-09 67.8 92 42.4
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.5e-07 60.5 56 53.6
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 2.8e-06 57.0 41 70.7
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 6.3e-06 55.8 90 38.9
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 8.2e-06 55.5 82 39.0


User provided reference genes

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