Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 3.3e-141 505.0 247 100.0
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 4.9e-76 288.5 178 74.7
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 1.0e-73 280.8 187 69.0
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 5.6e-72 275.0 198 66.2
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 1.6e-71 273.5 197 65.0
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 6.1e-71 271.6 191 69.1
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.8e-70 270.0 200 64.0
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 5.2e-70 268.5 211 63.0
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 8.9e-70 267.7 245 57.1
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 2.0e-69 266.5 183 66.7
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 7.5e-69 264.6 193 64.2
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.3e-68 263.8 178 69.7
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 2.2e-68 263.1 193 66.8
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.9e-68 262.7 203 63.5
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 2.9e-68 262.7 184 65.2
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 3.7e-68 262.3 181 65.7
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 2.4e-67 259.6 192 63.5
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 4.1e-67 258.8 190 64.2
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 7.0e-67 258.1 198 60.1
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 7.0e-67 258.1 188 65.4
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 9.2e-67 257.7 198 60.1
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.2e-66 257.3 190 62.6
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.6e-66 256.9 192 61.5
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 1.6e-66 256.9 191 61.8
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 3.5e-66 255.8 167 69.5
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 6.0e-66 255.0 194 61.9
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 7.8e-66 254.6 192 60.9
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 1.0e-65 254.2 181 64.1
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 1.3e-65 253.8 194 61.3
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 3.0e-65 252.7 179 63.1
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 3.0e-65 252.7 198 58.6
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 3.9e-65 252.3 173 66.5
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 3.9e-65 252.3 173 66.5
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 5.0e-65 251.9 192 65.1
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 5.0e-65 251.9 178 66.9
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 6.6e-65 251.5 178 66.3
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 6.6e-65 251.5 198 59.1
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 6.6e-65 251.5 198 59.1
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.1e-64 250.8 177 66.7
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.9e-64 250.0 182 64.8
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.9e-64 250.0 188 63.3
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.3e-64 249.2 194 62.4
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 4.3e-64 248.8 171 67.3
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 7.3e-64 248.1 194 62.4
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 7.3e-64 248.1 194 62.4
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 2.8e-63 246.1 198 60.1
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.6e-63 245.7 219 55.7
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 4.7e-63 245.4 202 58.9
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 4.7e-63 245.4 197 58.9
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.4e-62 243.8 190 60.5
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.3e-62 243.0 247 51.8
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 3.1e-62 242.7 214 58.4
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 3.1e-62 242.7 161 69.6
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 3.1e-62 242.7 178 62.4
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 4.0e-62 242.3 218 54.6
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 5.2e-62 241.9 182 59.3
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 1.5e-61 240.4 174 64.9
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.4e-61 239.2 176 64.2
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 4.4e-61 238.8 196 57.1
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 9.8e-61 237.7 192 57.3
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 1.7e-60 236.9 191 60.7
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 3.7e-60 235.7 187 61.5
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 8.3e-60 234.6 192 58.9
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 1.1e-59 234.2 191 60.2
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 1.1e-59 234.2 170 64.7
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 2.4e-59 233.0 192 59.9
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 4.1e-59 232.3 191 59.7
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 7.1e-59 231.5 183 61.2
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 1.2e-58 230.7 193 58.0
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 1.2e-58 230.7 189 60.3
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 1.2e-58 230.7 176 60.8
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.6e-58 230.3 189 57.7
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 2.1e-58 229.9 187 58.8
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 2.1e-58 229.9 188 56.4
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 3.5e-58 229.2 171 64.3
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 4.6e-58 228.8 222 52.7
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 6.0e-58 228.4 195 57.4
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 6.0e-58 228.4 182 61.5
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 7.8e-58 228.0 193 56.5
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 7.8e-58 228.0 191 58.6
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.8e-58 228.0 189 59.8
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 1.0e-57 227.6 191 58.1
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 1.3e-57 227.3 188 61.2
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 2.3e-57 226.5 177 60.5
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 2.3e-57 226.5 177 60.5
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 3.0e-57 226.1 183 59.6
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 3.0e-57 226.1 189 59.3
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 3.9e-57 225.7 186 57.0
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 3.9e-57 225.7 189 59.3
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 5.1e-57 225.3 197 56.9
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 6.6e-57 224.9 189 58.7
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 8.6e-57 224.6 195 57.4
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 1.1e-56 224.2 183 60.1
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 1.9e-56 223.4 186 56.5
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.9e-56 223.4 187 58.8
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.9e-56 223.4 151 70.2
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 1.9e-56 223.4 178 57.9
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 2.5e-56 223.0 182 57.7
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 7.3e-56 221.5 159 63.5
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 9.5e-56 221.1 191 55.5
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 9.5e-56 221.1 171 55.0
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 1.6e-55 220.3 178 57.9
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 1.8e-54 216.9 190 53.7
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.5e-53 213.8 183 54.6
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 4.4e-53 212.2 196 52.0
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.3e-52 210.7 141 63.8
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 1.7e-52 210.3 178 57.9
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 2.4e-51 206.5 155 63.2
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 7.1e-51 204.9 174 52.3
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 7.3e-48 194.9 180 55.0
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 7.3e-48 194.9 182 49.5
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 6.2e-47 191.8 164 60.4
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 5.2e-46 188.7 186 52.2
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.2e-44 183.3 205 49.3
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 4.3e-40 169.1 103 69.9
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 8.1e-39 164.9 103 68.9
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 6.9e-38 161.8 157 47.1
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 1.9e-32 143.7 104 64.4
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 2.5e-32 143.3 104 62.5
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.4e-27 127.5 76 69.7
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 6.7e-25 118.6 102 58.8
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 1.4e-22 110.9 101 57.4
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.2e-20 103.6 101 53.5
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 1.2e-18 97.8 83 59.0
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 9.6e-16 88.2 124 36.3
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 1.3e-15 87.8 126 37.3
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 1.6e-15 87.4 76 56.6
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 8.2e-15 85.1 76 55.3
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 1.4e-14 84.3 118 39.0
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 1.4e-14 84.3 118 37.3
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 2.4e-14 83.6 100 46.0
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.3e-12 77.8 118 33.1
MCO04G552 Micromonas commoda HOM05D005668 ORTHO05D007082 2.9e-12 76.6 100 41.0
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 1.1e-11 74.7 118 32.2
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.4e-11 74.3 118 32.2
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 3.2e-11 73.2 118 33.1
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 7.2e-11 72.0 118 33.1
MSTRG.13890 Avicennia marina HOM05D005144 ORTHO05D006112 9.3e-11 71.6 120 31.7
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 9.3e-11 71.6 118 34.7
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 9.3e-11 71.6 118 32.2
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 9.3e-11 71.6 105 39.0
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 1.2e-10 71.2 118 29.7
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 2.1e-10 70.5 118 32.2
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 2.1e-10 70.5 118 32.2
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 2.7e-10 70.1 118 31.4
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 3.5e-10 69.7 118 29.7
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 3.5e-10 69.7 118 32.2
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 4.6e-10 69.3 118 29.7
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 4.6e-10 69.3 118 32.2
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 6.1e-10 68.9 118 31.4
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 6.1e-10 68.9 118 31.4
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 1.0e-09 68.2 118 32.2
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 1.3e-09 67.8 118 30.5
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 1.3e-09 67.8 118 31.4
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 1.3e-09 67.8 118 31.4
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 1.8e-09 67.4 118 30.5
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 2.3e-09 67.0 120 29.2
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 2.3e-09 67.0 119 31.9
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 3.0e-09 66.6 118 29.7
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 3.0e-09 66.6 118 29.7
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 3.0e-09 66.6 118 29.7
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 3.0e-09 66.6 118 29.7
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 3.0e-09 66.6 118 32.2
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 3.9e-09 66.2 118 29.7
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 3.9e-09 66.2 118 29.7
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 5.1e-09 65.9 121 29.8
Lsat_1_v5_gn_6_8420 Lactuca sativa HOM05D005144 ORTHO05D006112 8.7e-09 65.1 120 28.3
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 1.1e-08 64.7 78 46.2
BraA03t12780Z Brassica rapa HOM05D005668 ORTHO05D007082 1.5e-08 64.3 41 70.7
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 1.5e-08 64.3 120 29.2
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 3.3e-08 63.2 118 28.0
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 3.3e-08 63.2 116 29.3
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 6.3e-07 58.9 119 27.7


User provided reference genes

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