Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.0e-114 415.2 218 100.0
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.1e-60 237.3 152 86.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.3e-44 182.6 194 58.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.3e-44 182.6 196 56.1
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.3e-42 175.3 189 55.0
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.9e-40 169.5 175 58.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.1e-39 167.5 205 51.7
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.4e-39 167.2 201 54.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.4e-39 167.2 201 54.2
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.5e-39 166.4 166 59.6
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.0e-37 161.0 171 58.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 3.0e-37 159.5 166 56.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 6.7e-37 158.3 198 52.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 8.7e-37 157.9 174 57.5
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.5e-36 157.1 166 58.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.5e-36 157.1 181 53.0
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.3e-36 156.0 165 55.8
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.7e-36 155.2 193 54.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 9.7e-36 154.5 171 57.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.3e-35 154.1 181 53.0
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.2e-35 153.3 207 51.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.8e-35 152.9 208 50.5
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 6.3e-35 151.8 184 52.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.8e-34 150.2 122 67.2
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.3e-34 148.7 167 54.5
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.2e-33 147.5 207 49.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.2e-33 147.5 209 47.8
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.2e-33 147.5 200 48.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.5e-33 147.1 201 51.2
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.0e-33 146.7 209 48.3
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.6e-33 146.4 169 56.2
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.4e-33 146.0 201 48.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.9e-33 145.2 173 52.0
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 7.7e-33 144.8 175 52.6
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.0e-32 144.4 177 54.8
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.0e-32 144.4 177 54.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-32 144.1 170 55.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-32 144.1 201 49.8
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.0e-32 142.1 206 47.6
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.0e-32 142.1 174 54.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 6.5e-32 141.7 168 53.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 6.5e-32 141.7 170 54.1
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-31 141.0 174 53.4
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-31 141.0 169 54.4
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.4e-31 140.6 207 47.3
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-31 140.2 208 46.6
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.2e-31 139.4 171 51.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.2e-31 139.4 209 45.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 4.2e-31 139.0 196 48.0
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.2e-31 138.3 174 52.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 9.4e-31 137.9 207 46.4
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.1e-30 136.7 170 53.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.6e-30 136.0 169 54.4
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.6e-30 135.6 196 44.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 4.6e-30 135.6 191 49.7
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.0e-29 132.9 207 44.9
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.0e-29 132.9 207 44.9
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.0e-29 132.9 185 48.6
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.0e-29 132.9 160 51.9
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 3.0e-29 132.9 186 48.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 3.9e-29 132.5 243 42.4
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 5.1e-29 132.1 171 49.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 5.1e-29 132.1 180 50.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 6.7e-29 131.7 192 46.9
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 8.8e-29 131.3 205 46.8
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 8.8e-29 131.3 173 51.4
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.0e-28 130.2 186 46.2
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 5.7e-28 128.6 229 41.0
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 7.4e-28 128.3 179 49.7
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 7.4e-28 128.3 179 49.7
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.7e-27 127.1 172 50.6
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.7e-27 127.1 181 47.5
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.7e-27 127.1 117 59.8
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.8e-27 126.3 171 49.7
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.8e-27 125.6 181 48.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.3e-27 125.2 171 49.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.4e-26 124.0 119 58.8
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.8e-26 123.6 210 42.9
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 2.4e-26 123.2 165 46.7
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.1e-26 122.5 170 48.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 9.1e-26 121.3 183 44.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.2e-25 120.9 281 35.9
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.2e-25 120.9 281 35.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-25 120.6 116 61.2
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-25 120.6 116 61.2
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.0e-25 120.2 178 45.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.6e-25 119.8 182 45.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.6e-25 119.8 150 50.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 3.4e-25 119.4 116 61.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 3.4e-25 119.4 116 58.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.5e-25 119.0 139 51.1
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.9e-25 118.6 167 49.7
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.9e-25 118.6 170 48.2
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 5.9e-25 118.6 116 56.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-24 117.5 214 40.2
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.2e-24 116.7 230 40.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 5.0e-24 115.5 137 52.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 6.5e-24 115.2 170 45.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 8.5e-24 114.8 186 44.1
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.1e-23 114.4 181 44.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 3.2e-23 112.8 174 46.0
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 7.2e-23 111.7 172 46.5
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.2e-22 110.9 102 64.7
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.1e-22 110.2 173 43.9
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.7e-22 109.8 140 45.7
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.6e-22 109.4 223 40.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.2e-21 105.5 117 59.8
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 5.2e-21 105.5 104 60.6
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 5.2e-21 105.5 116 54.3
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 6.7e-21 105.1 204 41.7
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.5e-20 104.0 215 40.5
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.5e-20 104.0 186 43.0
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.3e-19 100.9 178 42.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.7e-19 99.4 175 40.0
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 4.8e-19 99.0 119 56.3
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 6.3e-19 98.6 203 40.9
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 6.3e-19 98.6 177 42.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 6.3e-19 98.6 106 56.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.1e-18 96.3 236 36.0
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 3.1e-18 96.3 260 33.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.6e-17 94.0 118 52.5
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.6e-17 93.2 126 48.4
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.7e-17 91.7 176 40.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-16 90.1 179 36.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.2e-16 90.1 167 38.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 4.0e-13 79.3 127 41.7
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.2e-13 79.0 102 49.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.5e-12 77.4 127 40.9
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 2.0e-12 77.0 113 46.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 3.3e-12 76.3 127 40.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.2e-11 73.6 120 40.8
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-11 73.6 100 46.0
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-11 73.6 100 46.0
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.2e-11 73.6 100 46.0
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 4.1e-10 69.3 81 49.4
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.5e-09 65.9 83 51.8


User provided reference genes

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