Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.9e-53 212.2 107 100.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.9e-51 203.4 107 95.3
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.1e-43 179.9 104 82.7
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 4.0e-43 177.9 101 85.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.2e-42 176.4 104 80.8
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 4.4e-42 174.5 100 83.0
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.4e-42 174.5 98 83.7
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.6e-42 173.7 104 77.9
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 83.7
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.3e-41 172.9 105 78.1
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.7e-41 172.6 104 76.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.7e-41 172.6 98 82.7
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.2e-41 172.2 98 82.7
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 2.2e-41 172.2 98 81.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-41 172.2 98 84.7
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 2.2e-41 172.2 101 83.2
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.9e-41 171.8 104 76.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 82.7
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 82.7
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 82.7
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 81.6
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 3.8e-41 171.4 104 76.0
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.8e-41 171.4 106 79.2
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 83.7
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 83.7
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 3.8e-41 171.4 104 76.9
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.8e-41 171.4 104 80.8
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.9e-41 171.0 98 84.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 4.9e-41 171.0 106 79.2
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.9e-41 171.0 106 79.2
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.9e-41 171.0 106 79.2
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.9e-41 171.0 106 79.2
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 4.9e-41 171.0 98 80.6
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.9e-41 171.0 106 79.2
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 6.4e-41 170.6 98 81.6
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 6.4e-41 170.6 98 81.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.4e-41 170.6 101 79.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 6.4e-41 170.6 104 76.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 6.4e-41 170.6 98 82.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 8.4e-41 170.2 100 81.0
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 79.8
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 76.9
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 76.0
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 78.8
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 8.4e-41 170.2 98 80.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-40 169.9 101 77.2
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 83.7
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 82.7
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 81.6
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 80.8
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 81.6
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.1e-40 169.9 109 77.1
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 79.8
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 101 79.2
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 81.6
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 77.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 82.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 82.7
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.4e-40 169.5 98 82.7
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.4e-40 169.5 98 81.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.4e-40 169.5 104 76.9
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.4e-40 169.5 98 83.7
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.9e-40 169.1 98 81.6
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.9e-40 169.1 98 80.6
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.9e-40 169.1 98 80.6
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.9e-40 169.1 104 78.8
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.9e-40 169.1 98 82.7
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.4e-40 168.7 98 82.7
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.4e-40 168.7 98 81.6
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.4e-40 168.7 104 78.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.2e-40 168.3 98 80.6
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.1e-40 167.9 98 79.6
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.4e-40 167.5 98 80.6
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 5.4e-40 167.5 98 80.6
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.4e-40 167.5 98 82.7
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 5.4e-40 167.5 98 82.7
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.4e-40 167.5 98 81.6
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 7.1e-40 167.2 98 79.6
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.1e-40 167.2 98 80.6
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 98 80.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 98 81.6
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.6e-39 166.0 98 79.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.6e-39 166.0 104 76.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.6e-39 166.0 104 76.0
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.1e-39 165.6 98 81.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 2.1e-39 165.6 98 81.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.7e-39 165.2 104 76.9
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 3.5e-39 164.9 104 79.8
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.5e-39 164.9 98 79.6
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.5e-39 164.9 104 76.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 4.6e-39 164.5 98 80.6
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 4.6e-39 164.5 98 82.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 4.6e-39 164.5 98 80.6
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 7.8e-39 163.7 104 74.0
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.0e-38 163.3 98 80.6
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.3e-38 162.9 98 79.6
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.0e-38 161.8 98 77.6
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 6.6e-38 160.6 98 80.6
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-37 159.8 98 77.6
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.1e-37 159.8 98 78.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.1e-37 159.8 104 76.0
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 2.5e-37 158.7 96 81.2
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 4.3e-37 157.9 99 78.8
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 9.6e-37 156.8 101 74.3
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 9.6e-37 156.8 101 74.3
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.2e-36 156.4 100 78.0
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.2e-36 156.4 100 77.0
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.2e-36 156.4 99 77.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.6e-36 156.0 98 80.6
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.1e-36 155.6 100 79.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.8e-36 155.2 100 77.0
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 3.6e-36 154.8 100 77.0
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 3.6e-36 154.8 99 77.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 3.6e-36 154.8 98 75.5
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 4.7e-36 154.5 100 76.0
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 6.2e-36 154.1 98 78.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.2e-36 154.1 104 73.1
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 8.1e-36 153.7 100 76.0
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-35 153.3 99 76.8
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-35 153.3 99 76.8
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.1e-35 153.3 99 76.8
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.1e-35 153.3 99 76.8
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.4e-35 152.9 93 76.3
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 5.2e-35 151.0 100 74.0
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.2e-35 151.0 95 76.8
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 6.9e-35 150.6 99 76.8
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.9e-35 150.6 98 77.6
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 2.6e-34 148.7 100 76.0
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 2.6e-34 148.7 100 76.0
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 2.6e-34 148.7 100 76.0
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 2.6e-34 148.7 100 76.0
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.3e-33 146.4 102 69.6
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.9e-32 142.5 97 73.2
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.1e-29 133.3 82 78.0
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.5e-29 132.9 97 69.1
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.6e-28 129.4 99 65.7
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.8e-28 128.6 98 67.3
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.8e-27 125.9 81 77.8
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.3e-27 124.4 94 70.2
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.5e-26 122.9 96 70.8
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 3.4e-26 121.7 96 70.8
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 7.6e-26 120.6 98 63.3
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 2.2e-25 119.0 66 83.3
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 3.8e-25 118.2 83 72.3
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.3e-22 109.8 75 76.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.3e-22 109.0 85 67.1
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 5.1e-22 107.8 98 59.2
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.1e-21 106.7 85 62.4
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.9e-21 105.9 82 67.1
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.5e-21 105.5 65 75.4
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 8.1e-20 100.5 85 61.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 5.3e-19 97.8 56 80.4
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 8.4e-17 90.5 79 60.8
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 7.1e-16 87.4 48 83.3
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.6e-15 86.3 55 72.7
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 4.6e-15 84.7 54 72.2
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.0e-14 83.6 48 79.2
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.5e-13 79.0 86 50.0
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 3.1e-11 72.0 106 43.4
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 3.5e-07 58.5 35 77.1
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.3e-06 56.6 80 40.0


User provided reference genes

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