Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.6e-45 185.7 91 100.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.1e-17 93.2 58 74.1
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.2e-16 89.7 58 69.0
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 6.1e-16 87.4 58 69.0
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 7.9e-16 87.0 58 69.0
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.0e-15 86.7 58 70.7
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.8e-15 85.9 57 68.4
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.3e-15 85.5 58 69.0
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 2.3e-15 85.5 58 67.2
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.3e-15 85.5 54 72.2
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 3.9e-15 84.7 58 65.5
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.9e-15 84.7 58 69.0
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 3.9e-15 84.7 58 69.0
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 3.9e-15 84.7 58 69.0
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.9e-15 84.7 58 69.0
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.1e-15 84.3 66 60.6
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 6.7e-15 84.0 57 68.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 6.7e-15 84.0 57 71.9
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 6.7e-15 84.0 58 69.0
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.7e-15 84.0 58 65.5
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.7e-15 84.0 58 65.5
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 8.8e-15 83.6 81 53.1
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.1e-14 83.2 57 64.9
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.1e-14 83.2 57 64.9
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.1e-14 83.2 60 68.3
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.9e-14 82.4 58 69.0
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.9e-14 82.4 58 65.5
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.9e-14 82.4 58 65.5
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.9e-14 82.4 57 66.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.5e-14 82.0 58 63.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.5e-14 82.0 57 66.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 3.3e-14 81.6 59 66.1
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 3.3e-14 81.6 58 69.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 65.5
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 63.8
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 63.8
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 63.8
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 63.8
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 63.8
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 4.3e-14 81.3 58 60.3
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 7.4e-14 80.5 53 67.9
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 7.4e-14 80.5 58 60.3
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 7.4e-14 80.5 58 63.8
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 7.4e-14 80.5 58 65.5
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 9.7e-14 80.1 57 64.9
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.3e-13 79.7 57 66.7
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.3e-13 79.7 57 64.9
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.3e-13 79.7 57 61.4
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-13 79.3 58 63.8
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.7e-13 79.3 58 63.8
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.7e-13 79.3 58 65.5
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.7e-13 79.3 57 57.9
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.7e-13 79.3 57 64.9
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.2e-13 79.0 58 60.3
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.2e-13 79.0 57 63.2
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.8e-13 78.6 60 63.3
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 2.8e-13 78.6 57 61.4
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 3.7e-13 78.2 57 63.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 4.8e-13 77.8 59 62.7
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 4.8e-13 77.8 57 59.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 8.2e-13 77.0 58 63.8
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 8.2e-13 77.0 58 63.8
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 8.2e-13 77.0 58 63.8
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.1e-12 76.6 58 56.9
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.1e-12 76.6 59 59.3
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.1e-12 76.6 59 59.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.4e-12 76.3 57 61.4
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.8e-12 75.9 58 62.1
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.8e-12 75.9 54 63.0
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.4e-12 75.5 60 61.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.1e-12 75.1 57 59.6
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.1e-12 75.1 58 58.6
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 3.1e-12 75.1 57 59.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 6.9e-12 73.9 59 57.6
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 6.9e-12 73.9 59 57.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.1e-12 73.6 59 59.3
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 9.1e-12 73.6 57 57.9
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 9.1e-12 73.6 52 61.5
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.2e-11 73.2 60 55.0
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.2e-11 73.2 52 63.5
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-11 73.2 58 60.3
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.2e-11 73.2 55 56.4
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.5e-11 72.8 57 59.6
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.0e-11 72.4 57 59.6
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.6e-11 72.0 55 58.2
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.7e-11 70.5 55 56.4
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 7.7e-11 70.5 54 63.0
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.0e-10 70.1 52 61.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.3e-10 69.7 54 57.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.7e-10 69.3 54 57.4
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.0e-10 67.8 54 55.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 6.5e-10 67.4 57 61.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-09 65.1 59 42.4
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.2e-08 63.2 58 51.7
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.1e-08 62.4 55 47.3
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 6.1e-08 60.8 54 53.7
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 7.9e-08 60.5 52 48.1
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 8.8e-07 57.0 57 49.1
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 8.8e-07 57.0 57 49.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 8.8e-07 57.0 57 47.4
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.8e-07 57.0 47 51.1
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.1e-06 56.6 57 47.4
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.1e-06 56.6 57 47.4
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.6e-06 55.5 57 49.1
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 7.4e-06 53.9 80 38.8


User provided reference genes

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