Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.0e-82 309.3 184 100.0
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.5e-53 212.6 142 84.5
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 4.9e-41 171.8 139 68.3
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 1.1e-40 170.6 142 66.2
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.4e-40 170.2 142 66.9
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 1.9e-40 169.9 144 66.0
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 4.2e-40 168.7 166 58.4
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.6e-39 166.8 140 66.4
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.6e-39 166.8 142 63.4
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 2.1e-39 166.4 142 64.1
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 2.7e-39 166.0 143 64.3
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 3.5e-39 165.6 143 64.3
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 3.5e-39 165.6 156 59.6
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 4.6e-39 165.2 144 61.8
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 6.0e-39 164.9 144 63.9
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 7.9e-39 164.5 142 62.0
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 7.9e-39 164.5 157 58.0
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 1.0e-38 164.1 142 61.3
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 1.0e-38 164.1 142 62.7
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 1.0e-38 164.1 144 63.2
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 1.8e-38 163.3 142 63.4
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.8e-38 163.3 142 63.4
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 1.8e-38 163.3 140 64.3
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 1.8e-38 163.3 143 64.3
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.8e-38 163.3 143 64.3
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 2.3e-38 162.9 142 61.3
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 2.3e-38 162.9 144 62.5
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 2.3e-38 162.9 144 63.2
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 3.9e-38 162.2 142 61.3
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 6.7e-38 161.4 145 60.7
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 6.7e-38 161.4 141 66.7
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 8.7e-38 161.0 148 60.1
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 8.7e-38 161.0 144 61.8
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 1.1e-37 160.6 144 61.8
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 1.5e-37 160.2 147 61.2
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 3.3e-37 159.1 142 62.0
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 7.4e-37 157.9 142 62.0
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 9.6e-37 157.5 142 61.3
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 9.6e-37 157.5 142 61.3
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 9.6e-37 157.5 142 61.3
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 9.6e-37 157.5 142 61.3
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 9.6e-37 157.5 137 62.0
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 1.3e-36 157.1 140 61.4
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.3e-36 157.1 147 61.2
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 2.8e-36 156.0 137 63.5
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 3.7e-36 155.6 143 60.8
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 4.8e-36 155.2 140 60.0
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 4.8e-36 155.2 142 60.6
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 6.2e-36 154.8 149 59.7
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.4e-35 153.7 140 60.7
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.4e-35 153.7 140 60.7
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 3.1e-35 152.5 138 60.1
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 3.1e-35 152.5 137 61.3
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 4.1e-35 152.1 138 58.7
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 4.1e-35 152.1 143 60.1
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 4.1e-35 152.1 137 60.6
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 4.1e-35 152.1 137 60.6
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 5.3e-35 151.8 142 58.5
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 5.3e-35 151.8 139 59.7
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 9.0e-35 151.0 138 59.4
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 9.0e-35 151.0 144 58.3
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 1.2e-34 150.6 138 60.1
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 1.5e-34 150.2 138 59.4
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 1.5e-34 150.2 140 58.6
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 2.0e-34 149.8 144 56.9
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 2.0e-34 149.8 138 58.7
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 2.0e-34 149.8 138 58.7
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 2.0e-34 149.8 140 58.6
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 2.6e-34 149.4 140 57.9
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 2.6e-34 149.4 161 55.9
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 3.4e-34 149.1 137 58.4
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 4.5e-34 148.7 138 58.7
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 7.6e-34 147.9 138 58.0
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 7.6e-34 147.9 140 57.9
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 7.6e-34 147.9 140 57.9
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 1.3e-33 147.1 138 58.0
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 1.3e-33 147.1 143 56.6
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 1.7e-33 146.7 143 57.3
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 3.8e-33 145.6 142 57.0
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 6.5e-33 144.8 146 57.5
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 6.5e-33 144.8 142 57.0
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 6.5e-33 144.8 141 59.6
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 1.1e-32 144.1 141 56.7
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.4e-32 143.7 164 51.8
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 5.5e-32 141.7 122 64.8
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 1.6e-31 140.2 139 56.1
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 2.1e-31 139.8 140 63.6
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 2.7e-31 139.4 138 56.5
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 1.8e-30 136.7 153 51.6
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 1.6e-28 130.2 165 48.5
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 1.6e-28 130.2 110 69.1
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 4.1e-27 125.6 140 54.3
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 4.1e-27 125.6 142 54.9
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 2.0e-26 123.2 134 48.5
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 2.6e-26 122.9 112 58.9
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 4.5e-26 122.1 136 47.1
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.3e-25 120.6 139 48.9
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 1.3e-25 120.6 142 50.0
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 1.7e-25 120.2 142 44.4
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 3.8e-25 119.0 111 57.7
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 1.4e-24 117.1 141 51.1
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 1.4e-24 117.1 140 50.7
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 1.9e-24 116.7 144 50.7
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.2e-24 115.9 91 73.6
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 4.2e-24 115.5 110 67.3
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 7.2e-24 114.8 111 60.4
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 6.1e-23 111.7 108 56.5
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 3.9e-22 109.0 217 37.3
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 5.7e-21 105.1 101 54.5
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 9.7e-21 104.4 104 53.8
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 1.3e-20 104.0 133 45.9
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 2.8e-20 102.8 151 48.3
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 2.8e-20 102.8 79 69.6
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 3.7e-20 102.4 88 64.8
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 3.7e-20 102.4 142 45.8
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 3.7e-20 102.4 81 67.9
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 4.8e-20 102.1 77 70.1
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 4.8e-20 102.1 77 70.1
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 6.3e-20 101.7 118 48.3
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 4.5e-18 95.5 142 43.0
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 1.8e-14 83.6 60 71.7
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 6.7e-14 81.6 134 51.5
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 2.2e-12 76.6 134 47.0
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 3.1e-11 72.8 81 51.9
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 7.7e-10 68.2 46 73.9
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 4.2e-08 62.4 45 64.4
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 1.2e-07 60.8 53 56.6
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 3.6e-07 59.3 46 60.9
CDE07G1246 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.0e-06 56.2 31 80.6


User provided reference genes

Program Settings