Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 0.0e+00 1597.0 770 100.0
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.0e-306 1055.4 777 67.7
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.4e-302 1042.7 776 67.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.3e-297 1025.4 779 65.9
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.9e-296 1022.3 777 66.3
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 769 66.1
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 770 66.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.4e-293 1011.1 794 64.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 3.7e-292 1008.1 775 65.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 762 66.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.3e-289 998.8 780 64.9
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.3e-289 998.8 770 66.1
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.0e-289 998.4 780 64.9
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 5.1e-289 997.7 770 66.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.1e-289 997.7 770 65.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.5e-288 995.3 773 65.2
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.8e-287 991.9 770 65.8
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.8e-287 991.9 770 65.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 3.6e-287 991.5 777 63.7
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.6e-287 991.5 775 64.6
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.6e-287 991.5 770 65.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 6.2e-287 990.7 769 64.2
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-286 989.9 775 65.7
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-286 989.9 770 65.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.8e-286 989.2 774 64.3
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.1e-286 988.4 770 65.2
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 4.0e-286 988.0 775 64.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.2e-285 986.5 768 65.8
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.5e-285 986.1 777 62.8
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 5.8e-285 984.2 769 64.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 7.6e-285 983.8 785 63.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.3e-284 983.0 780 64.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.9e-284 981.9 769 63.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 3.8e-284 981.5 801 63.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.4e-283 979.5 780 62.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.4e-283 978.8 778 62.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 4.2e-283 978.0 781 63.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 4.2e-283 978.0 807 62.9
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 5.4e-283 977.6 785 63.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.2e-283 976.9 770 64.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 9.2e-283 976.9 780 62.7
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.6e-282 976.1 768 65.5
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 2.1e-282 975.7 771 63.6
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.5e-282 974.9 770 65.1
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 3.5e-282 974.9 786 63.1
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 7.8e-282 973.8 786 63.0
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.0e-281 973.4 780 62.6
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.3e-281 972.2 784 63.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.3e-281 972.2 779 63.7
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.9e-281 971.5 770 65.1
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 5.6e-280 967.6 747 64.4
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.3e-280 967.2 770 64.5
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.2e-279 966.5 779 61.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-279 965.3 779 61.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.7e-279 964.5 772 61.7
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-278 963.0 770 63.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 4.0e-278 961.4 775 62.1
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 4.0e-278 961.4 779 61.6
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.0e-278 961.4 779 61.6
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.2e-277 959.9 777 62.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-277 958.7 771 64.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 9.9e-277 956.8 766 62.0
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.3e-276 956.4 779 62.6
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.4e-275 952.2 779 61.1
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.1e-275 950.7 770 60.9
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 4.6e-274 948.0 771 60.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 8.7e-273 943.7 740 63.0
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-272 943.3 775 60.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.5e-272 943.0 777 60.0
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 3.3e-272 941.8 772 62.2
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 5.6e-272 941.0 801 61.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.8e-271 938.7 777 61.3
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.3e-270 934.5 770 63.0
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 6.9e-270 934.1 773 59.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.2e-269 933.3 777 60.7
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.5e-269 932.9 809 58.1
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.5e-269 932.9 778 59.9
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-269 932.9 775 61.4
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-269 932.6 779 61.7
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.0e-269 932.6 774 61.6
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.6e-269 930.6 770 62.9
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 7.6e-269 930.6 759 61.3
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.9e-268 927.9 735 63.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 6.4e-268 927.5 786 60.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.4e-267 925.6 785 59.9
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 4.2e-267 924.9 750 62.5
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 5.4e-267 924.5 774 61.8
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 5.4e-267 924.5 769 59.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 9.3e-267 923.7 777 61.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 7.9e-266 920.6 768 59.2
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 4.3e-264 914.8 773 60.4
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.7e-263 911.8 771 60.2
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 4.8e-263 911.4 768 59.5
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.1e-262 910.2 774 59.8
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.1e-262 908.7 774 60.2
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.0e-262 908.3 777 60.7
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-261 906.7 778 59.8
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.6e-261 905.6 764 60.1
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.4e-261 905.2 784 59.6
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.0e-260 903.7 777 60.4
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.4e-260 900.6 770 59.9
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.2e-259 898.7 772 59.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.5e-259 897.9 784 59.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.2e-258 896.7 769 59.4
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.1e-258 896.0 771 59.5
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.0e-257 893.6 773 59.5
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 6.7e-257 891.0 762 59.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.5e-256 889.8 741 62.8
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.5e-256 889.0 784 58.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.6e-256 887.9 770 59.4
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 5.6e-256 887.9 767 59.1
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 7.4e-256 887.5 754 60.9
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.6e-255 886.3 777 58.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 8.2e-255 884.0 769 59.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.8e-254 882.9 832 56.1
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.1e-254 882.1 778 59.1
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 7.6e-253 877.5 777 58.4
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 4.2e-251 871.7 773 58.1
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 5.5e-251 871.3 771 58.5
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.1e-243 847.0 784 57.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 5.5e-243 844.7 791 56.6
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 9.4e-243 844.0 770 56.6
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.4e-241 840.1 759 57.7
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.3e-238 828.2 772 55.6
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 5.9e-237 824.7 769 57.1
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.2e-235 818.9 893 51.4
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.2e-235 817.8 474 85.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 5.1e-233 811.6 724 58.3
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 9.7e-232 807.4 705 60.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 7.0e-230 801.2 763 56.0
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.5e-229 800.0 771 54.3
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 7.4e-224 781.2 775 53.8
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.3e-222 775.0 773 54.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.5e-220 768.1 765 53.9
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.9e-219 766.5 732 55.7
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 4.2e-219 765.4 733 55.8
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.9e-211 740.0 709 57.1
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.4e-206 721.8 741 51.3
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 5.4e-206 721.8 685 56.2
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 6.8e-185 651.7 781 46.1
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.5e-179 634.0 734 45.8
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.4e-174 616.7 763 44.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.5e-171 607.4 793 44.1
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.2e-170 604.4 760 43.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.4e-166 590.1 768 44.0
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 6.0e-157 558.9 736 41.8
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.7e-156 555.1 264 97.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 4.8e-154 549.3 410 67.8
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.1e-153 548.1 445 61.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-137 493.0 393 61.6
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-137 493.0 393 61.6
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-134 485.0 402 61.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.3e-130 471.5 544 47.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 6.1e-125 452.6 269 79.6
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.7e-107 392.9 426 48.6
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.4e-105 388.3 749 35.1
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 4.3e-70 270.4 759 28.3
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-68 264.6 273 50.2
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 8.1e-53 213.0 182 56.6
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 5.4e-49 200.3 282 41.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.4e-41 174.9 235 44.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-35 155.6 93 76.3
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 8.7e-31 139.8 149 51.0
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-27 129.4 66 78.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-22 112.8 161 38.5
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.5e-19 100.9 131 38.9
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 8.2e-13 80.1 122 37.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.5e-11 75.9 111 43.2
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 5.0e-10 70.9 105 41.0
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.8e-07 62.4 66 48.5


User provided reference genes

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