Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3517 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 1.8e-57 225.7 116 100.0
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.5e-14 81.3 77 63.6
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.1e-13 79.3 81 61.7
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 2.7e-13 79.0 76 65.8
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 6.1e-13 77.8 76 59.2
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 6.1e-13 77.8 77 63.6
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 8.0e-13 77.4 77 61.0
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.0e-12 77.0 77 58.4
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.0e-12 77.0 79 62.0
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.0e-12 77.0 76 60.5
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-12 76.6 76 59.2
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-12 76.6 76 59.2
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-12 76.6 77 58.4
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 2.3e-12 75.9 77 61.0
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.0e-12 75.5 78 60.3
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 3.0e-12 75.5 77 59.7
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 3.0e-12 75.5 81 56.8
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 5.2e-12 74.7 78 61.5
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 5.2e-12 74.7 78 62.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 6.8e-12 74.3 79 58.2
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 8.8e-12 73.9 78 61.5
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 8.8e-12 73.9 78 60.3
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.2e-11 73.6 79 62.0
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.2e-11 73.6 77 59.7
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 1.5e-11 73.2 79 53.2
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.5e-11 73.2 80 57.5
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.5e-11 73.2 78 60.3
SEGI_32259 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.5e-11 73.2 75 57.3
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.0e-11 72.8 78 52.6
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 2.0e-11 72.8 77 61.0
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.0e-11 72.8 78 57.7
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.6e-11 72.4 77 61.0
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 3.4e-11 72.0 78 53.8
SEGI_28651 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 3.4e-11 72.0 75 58.7
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.4e-11 71.6 78 59.0
CDE02G2904 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 4.4e-11 71.6 78 60.3
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 5.7e-11 71.2 77 58.4
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 5.7e-11 71.2 77 58.4
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 5.7e-11 71.2 77 62.3
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.7e-11 71.2 78 59.0
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 5.7e-11 71.2 78 60.3
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 5.7e-11 71.2 77 59.7
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.5e-11 70.9 78 60.3
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 7.5e-11 70.9 75 64.0
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 7.5e-11 70.9 75 61.3
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 9.8e-11 70.5 79 55.7
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.8e-11 70.5 78 60.3
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.8e-11 70.5 78 61.5
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 9.8e-11 70.5 78 56.4
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 9.8e-11 70.5 78 60.3
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 1.3e-10 70.1 77 61.0
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-10 70.1 77 61.0
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 1.3e-10 70.1 74 58.1
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.3e-10 70.1 78 60.3
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 77 58.4
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 77 55.8
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 1.7e-10 69.7 81 49.4
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.7e-10 69.7 78 53.8
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 78 53.8
SEGI_27294 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 78 57.7
SEGI_27338 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 75 57.3
SEGI_29180 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 78 57.7
SEGI_31010 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-10 69.7 75 57.3
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.7e-10 69.7 76 57.9
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 2.2e-10 69.3 74 58.1
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.2e-10 69.3 78 56.4
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 2.2e-10 69.3 78 56.4
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 2.8e-10 68.9 77 61.0
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 2.8e-10 68.9 79 58.2
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 3.7e-10 68.6 79 45.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 3.7e-10 68.6 78 57.7
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 3.7e-10 68.6 77 57.1
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 3.7e-10 68.6 77 61.0
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 4.8e-10 68.2 78 46.2
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 4.8e-10 68.2 77 58.4
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 4.8e-10 68.2 76 59.2
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.8e-10 68.2 79 44.3
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.8e-10 68.2 78 57.7
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 6.3e-10 67.8 80 56.2
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.3e-10 67.8 79 44.3
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 6.3e-10 67.8 78 56.4
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.3e-10 67.4 78 53.8
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 8.3e-10 67.4 81 54.3
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 8.3e-10 67.4 76 59.2
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-09 67.0 79 44.3
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.1e-09 67.0 79 44.3
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.1e-09 67.0 78 57.7
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 1.4e-09 66.6 79 44.3
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 1.4e-09 66.6 79 44.3
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 2.4e-09 65.9 75 45.3
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 3.1e-09 65.5 78 43.6
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 3.1e-09 65.5 78 43.6
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 3.1e-09 65.5 78 43.6
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 3.1e-09 65.5 78 43.6
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 3.1e-09 65.5 79 54.4
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 3.1e-09 65.5 81 56.8
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-09 65.1 79 55.7
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-09 65.1 79 55.7
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-09 65.1 79 55.7
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.1e-09 65.1 82 56.1
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 4.1e-09 65.1 78 59.0
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.4e-09 64.7 78 42.3
AUR62019082 Chenopodium quinoa HOM05D002160 ORTHO05D002012 5.4e-09 64.7 77 54.5
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 7.0e-09 64.3 76 53.9
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 9.1e-09 63.9 77 54.5
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 1.2e-08 63.5 79 43.0
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.2e-08 63.5 79 53.2
ClCG10G021120 Citrullus lanatus HOM05D002160 ORTHO05D002012 1.6e-08 63.2 75 54.7
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.6e-08 63.2 73 57.5
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 2.0e-08 62.8 77 53.2
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.0e-08 62.8 76 51.3
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 2.0e-08 62.8 75 57.3
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 3.5e-08 62.0 67 61.2
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 3.5e-08 62.0 81 40.7
Sed0021463 Sechium edule HOM05D002160 ORTHO05D002012 3.5e-08 62.0 78 55.1
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 4.5e-08 61.6 77 54.5
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 4.5e-08 61.6 77 57.1
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 5.9e-08 61.2 79 53.2
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 7.7e-08 60.8 85 40.0
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 1.3e-07 60.1 74 55.4
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.7e-07 59.7 78 44.9
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 2.3e-07 59.3 80 55.0
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 2.3e-07 59.3 76 55.3
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 2.9e-07 58.9 78 43.6
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.8e-07 58.5 77 49.4
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 8.6e-07 57.4 78 51.3
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.5e-06 56.6 80 50.0
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.5e-06 56.6 76 44.7
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.5e-06 55.8 101 47.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.5e-06 55.8 71 42.3
SEGI_22523 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.3e-06 55.5 76 36.8
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 3.3e-06 55.5 79 50.6
HanXRQChr08g0227151 Helianthus annuus HOM05D002160 ORTHO05D002012 4.2e-06 55.1 72 38.9
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.5e-06 54.7 77 46.8
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.5e-06 54.7 80 50.0
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 7.2e-06 54.3 80 55.0
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 7.2e-06 54.3 53 49.1
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 9.5e-06 53.9 77 51.9


User provided reference genes

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