Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 0.0e+00 1129.0 623 100.0
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.7e-173 613.6 698 55.9
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.8e-173 612.1 701 56.6
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 5.9e-171 605.1 687 55.6
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 8.8e-167 591.3 699 56.5
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.3e-165 585.1 709 54.4
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 7.7e-163 578.2 697 54.5
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.3e-162 577.4 693 54.4
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.7e-162 577.0 698 54.0
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.7e-162 577.0 703 53.9
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.9e-162 576.2 705 53.9
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 8.6e-162 574.7 699 53.2
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 8.6e-162 574.7 695 53.5
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.5e-161 573.9 701 52.2
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.9e-161 573.5 699 53.5
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 4.3e-161 572.4 685 54.7
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.6e-161 572.0 708 53.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 3.6e-160 569.3 699 52.9
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.7e-160 568.9 706 52.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.4e-159 567.4 673 53.8
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.3e-159 566.6 709 53.9
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 5.2e-159 565.5 708 52.8
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 5.2e-159 565.5 695 53.1
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 6.8e-159 565.1 676 53.6
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 5.7e-158 562.0 750 50.5
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 7.5e-158 561.6 705 53.0
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.2e-157 560.1 714 52.9
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 4.1e-156 555.8 698 52.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.2e-155 554.3 706 52.3
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 7.8e-155 551.6 702 51.4
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.0e-154 549.7 529 62.8
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.5e-153 546.6 703 51.5
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 3.3e-153 546.2 694 51.3
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 5.6e-153 545.4 590 57.6
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 5.6e-153 545.4 724 50.4
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 9.5e-153 544.7 696 51.9
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.2e-152 544.3 699 51.4
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.6e-152 543.9 698 50.6
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.1e-152 543.5 704 51.3
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.6e-152 542.7 690 52.0
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 3.6e-152 542.7 713 51.3
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.7e-152 542.3 699 51.6
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 6.2e-152 542.0 695 50.8
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 6.2e-152 542.0 660 53.0
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 5.2e-151 538.9 716 51.7
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 5.2e-151 538.9 698 49.9
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 6.8e-151 538.5 712 50.6
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 8.9e-151 538.1 702 50.1
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.5e-150 537.3 697 52.7
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 4.4e-150 535.8 700 50.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 4.4e-150 535.8 692 52.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 5.8e-150 535.4 706 51.7
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.9e-149 533.1 683 51.5
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 4.9e-149 532.3 706 49.9
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 4.9e-149 532.3 441 68.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 6.4e-149 531.9 705 51.2
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 8.3e-149 531.6 695 50.1
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 8.3e-149 531.6 705 51.8
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.4e-148 528.9 695 51.2
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.0e-148 528.5 717 48.8
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.2e-147 527.7 692 51.6
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.3e-146 524.2 697 50.6
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.3e-146 523.5 724 49.3
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 3.9e-146 522.7 703 50.6
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 8.6e-146 521.5 712 51.8
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.9e-145 520.4 705 48.7
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.5e-145 520.0 706 51.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 2.5e-145 520.0 697 49.2
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 3.3e-145 519.6 705 50.1
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 5.6e-145 518.8 670 50.4
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.8e-144 516.5 707 49.5
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.8e-144 516.5 756 48.5
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.8e-144 516.5 681 49.2
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.2e-142 511.1 698 50.0
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 2.0e-142 510.4 722 48.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 7.5e-142 508.4 462 63.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 2.2e-141 506.9 698 49.6
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 4.9e-141 505.8 690 50.1
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.1e-140 504.6 724 48.9
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 5.4e-140 502.3 518 59.3
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.2e-139 501.1 697 48.5
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.6e-139 500.7 704 49.1
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 4.6e-139 499.2 721 47.4
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.7e-138 497.3 721 47.4
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 3.0e-138 496.5 709 49.6
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.0e-138 496.5 698 48.6
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.1e-138 495.7 721 47.3
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.3e-137 492.7 726 46.7
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-136 490.7 696 49.6
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.1e-136 490.3 729 47.7
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.1e-135 486.5 709 48.0
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 4.0e-135 486.1 653 51.1
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 8.9e-135 485.0 677 50.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-132 478.0 725 47.4
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.1e-132 478.0 740 46.8
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.4e-132 476.9 700 47.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 9.2e-132 474.9 677 49.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.3e-130 470.3 736 46.9
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.1e-129 468.0 784 45.0
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.6e-128 464.2 640 51.2
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 8.9e-127 458.4 729 47.5
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.2e-126 458.0 726 44.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 9.9e-126 454.9 380 67.6
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 8.7e-114 415.2 605 47.4
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 6.4e-109 399.1 664 45.0
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-107 394.4 688 43.0
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-106 391.3 231 94.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 3.3e-105 386.7 388 60.3
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-99 367.1 665 43.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.4e-95 354.8 696 38.9
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.2e-93 347.4 277 74.0
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.9e-83 312.4 218 77.1
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 9.7e-81 305.4 236 71.2
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.8e-80 303.9 526 44.5
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-75 288.5 219 71.7
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.2e-72 275.8 199 74.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.2e-72 275.8 199 74.4
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 5.0e-69 266.5 177 78.5
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.1e-67 261.2 490 41.4
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.8e-66 258.1 490 41.2
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 7.5e-65 252.7 172 77.3
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 7.7e-62 242.7 471 40.8
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 3.5e-54 217.2 418 38.8
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 5.9e-46 189.9 125 77.6
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.6e-45 186.0 471 36.1
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.8e-42 176.4 430 37.0
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.5e-41 175.3 430 37.0
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 5.0e-37 160.2 436 36.7
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.1e-31 140.6 201 48.3
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 3.3e-28 131.0 94 70.2
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 4.3e-28 130.6 86 80.2
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 7.3e-28 129.8 347 34.3
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 3.5e-22 110.9 246 38.2
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 6.6e-21 106.7 87 70.1
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 9.5e-20 102.8 211 40.3
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.6e-19 102.1 72 73.6
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.2e-19 100.1 70 75.7
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.2e-19 100.1 70 75.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.2e-19 100.1 70 75.7
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-16 91.7 70 74.3
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-15 88.2 118 49.2
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.1e-13 80.5 265 31.7
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.9e-12 78.6 218 35.3
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 3.3e-12 77.8 446 25.1
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.1e-11 75.1 97 50.5
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 7.6e-09 66.6 310 25.8
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 3.8e-08 64.3 335 25.7
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 3.8e-08 64.3 347 23.6
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 1.4e-07 62.4 359 25.6
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.4e-07 61.6 50 74.0
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 3.2e-07 61.2 273 25.6
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 4.2e-07 60.8 324 23.1
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 5.4e-07 60.5 329 25.2
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 9.3e-07 59.7 314 25.5
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 9.3e-07 59.7 324 25.6
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 1.2e-06 59.3 328 24.4
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 1.2e-06 59.3 279 26.9
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.6e-06 58.9 319 24.8
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.6e-06 58.9 337 24.0
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.6e-06 58.9 345 24.9
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 2.1e-06 58.5 301 25.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.7e-06 58.2 345 24.9
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 2.7e-06 58.2 322 23.0
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 3.5e-06 57.8 310 25.2
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 3.5e-06 57.8 315 23.8
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.5e-06 57.8 337 25.5
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 4.6e-06 57.4 295 26.1
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 4.6e-06 57.4 328 24.1
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 6.0e-06 57.0 328 24.7
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 7.8e-06 56.6 334 26.0


User provided reference genes

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