Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3491 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 8.7e-58 226.9 124 100.0
CDE02G3182 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 5.7e-25 117.9 74 87.8
MBI12_g01758_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 6.8e-18 94.4 80 66.2
MBI04_g04799_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 1.3e-16 90.1 81 61.7
TAR374G1299 Trochodendron aralioides HOM05D003230 ORTHO05D003680 8.3e-16 87.4 83 54.2
PSO063G4824 Papaver somniferum HOM05D003230 ORTHO05D003680 1.1e-15 87.0 86 54.7
TAR375G0039 Trochodendron aralioides HOM05D003230 ORTHO05D003680 1.8e-15 86.3 83 55.4
PSO384G4355 Papaver somniferum HOM05D003230 ORTHO05D003680 2.4e-15 85.9 86 53.5
Aqoxy5G04400 Aquilegia oxysepala HOM05D003230 ORTHO05D003680 5.9e-14 81.3 81 51.9
Dinv29184 Davidia involucrata HOM05D003230 ORTHO05D003680 3.8e-13 78.6 84 47.6
Cpa.g.sc37.119 Carica papaya HOM05D003230 ORTHO05D003680 5.0e-13 78.2 86 48.8
Actinidia34293 Actinidia chinensis HOM05D003230 ORTHO05D003680 8.5e-13 77.4 83 53.0
Dinv17274 Davidia involucrata HOM05D003230 ORTHO05D003680 1.5e-12 76.6 83 48.2
Nn7g38179 Nelumbo nucifera HOM05D003230 ORTHO05D003680 1.9e-12 76.3 91 48.4
Cfa011873 Carpinus fangiana HOM05D003230 ORTHO05D003680 2.5e-12 75.9 86 47.7
PGR031G1665 Punica granatum HOM05D003230 ORTHO05D003680 4.2e-12 75.1 84 48.8
PGR042G1295 Punica granatum HOM05D003230 ORTHO05D003680 4.2e-12 75.1 87 51.7
CSS0049301 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 5.5e-12 74.7 84 46.4
AUR62002554 Chenopodium quinoa HOM05D003230 ORTHO05D003680 5.5e-12 74.7 84 47.6
vmacro06480 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 5.5e-12 74.7 95 45.3
Rhsim03G0218900 Rhododendron simsii HOM05D003230 ORTHO05D003680 7.2e-12 74.3 81 50.6
Actinidia28274 Actinidia chinensis HOM05D003230 ORTHO05D003680 9.4e-12 73.9 85 54.1
Lsat_1_v5_gn_4_50621 Lactuca sativa HOM05D003230 ORTHO05D003680 9.4e-12 73.9 84 50.0
Actinidia08726 Actinidia chinensis HOM05D003230 ORTHO05D003680 1.2e-11 73.6 83 50.6
CDE12G0880 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 1.2e-11 73.6 91 44.0
DCAR_020396 Daucus carota HOM05D003230 ORTHO05D003680 1.2e-11 73.6 92 47.8
HanXRQChr11g0327201 Helianthus annuus HOM05D003230 ORTHO05D003680 1.6e-11 73.2 74 54.1
Hma1.2p1_0115F.1_g055850 Hydrangea macrophylla HOM05D003230 ORTHO05D003680 2.1e-11 72.8 89 44.9
Lj3C891G10 Lonicera japonica HOM05D003230 ORTHO05D003680 2.1e-11 72.8 81 49.4
Sed0010900 Sechium edule HOM05D003230 ORTHO05D003680 2.7e-11 72.4 85 45.9
Lsat_1_v5_gn_7_23521 Lactuca sativa HOM05D003230 ORTHO05D003680 3.6e-11 72.0 74 54.1
HanXRQChr17g0556021 Helianthus annuus HOM05D003230 ORTHO05D003680 4.7e-11 71.6 73 53.4
AUR62014810 Chenopodium quinoa HOM05D003230 ORTHO05D003680 6.1e-11 71.2 84 48.8
TWI81G0087 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 6.1e-11 71.2 84 44.0
Atru.chr9.2608 Acer truncatum HOM05D003230 ORTHO05D003680 8.0e-11 70.9 84 50.0
Hund25962 Selenicereus undatus HOM05D003230 ORTHO05D003680 8.0e-11 70.9 84 47.6
THA.LOC104806468 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 8.0e-11 70.9 77 49.4
Thecc.03G213500 Theobroma cacao HOM05D003230 ORTHO05D003680 8.0e-11 70.9 84 48.8
GSVIVG01019720001 Vitis vinifera HOM05D003230 ORTHO05D003680 8.0e-11 70.9 86 46.5
CDE04G2638 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 1.0e-10 70.5 106 38.7
HPP92_025402 Vanilla planifolia HOM05D003230 ORTHO05D003680 1.0e-10 70.5 76 47.4
Actinidia18693 Actinidia chinensis HOM05D003230 ORTHO05D003680 1.4e-10 70.1 85 52.9
CiPaw.11G106000 Carya illinoinensis HOM05D003230 ORTHO05D003680 1.4e-10 70.1 86 45.3
AUR62017004 Chenopodium quinoa HOM05D003230 ORTHO05D003680 1.8e-10 69.7 84 47.6
Haze_09234 Corylus avellana HOM05D003230 ORTHO05D003680 1.8e-10 69.7 90 44.4
EL10Ac8g20374 Beta vulgaris HOM05D003230 ORTHO05D003680 2.3e-10 69.3 84 45.2
AUR62029972 Chenopodium quinoa HOM05D003230 ORTHO05D003680 2.3e-10 69.3 81 45.7
Ah.09g237290 Amaranthus hybridus HOM05D003230 ORTHO05D003680 3.0e-10 68.9 86 44.2
ClCG01G001210 Citrullus lanatus HOM05D003230 ORTHO05D003680 3.0e-10 68.9 86 43.0
HanXRQChr04g0116771 Helianthus annuus HOM05D003230 ORTHO05D003680 3.0e-10 68.9 73 52.1
Sc01g0010940 Simmondsia chinensis HOM05D003230 ORTHO05D003680 3.0e-10 68.9 83 45.8
vmacro10177 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 3.0e-10 68.9 84 51.2
Dinv10539 Davidia involucrata HOM05D003230 ORTHO05D003680 4.0e-10 68.6 86 43.0
MD06G1127700 Malus domestica HOM05D003230 ORTHO05D003680 4.0e-10 68.6 73 47.9
Peaxi162Scf01650g00041 Petunia axillaris HOM05D003230 ORTHO05D003680 4.0e-10 68.6 100 46.0
Dinv11462 Davidia involucrata HOM05D003230 ORTHO05D003680 5.2e-10 68.2 86 44.2
Sed0000082 Sechium edule HOM05D003230 ORTHO05D003680 5.2e-10 68.2 85 41.2
THA.LOC104813070 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 5.2e-10 68.2 78 50.0
DCAR_010553 Daucus carota HOM05D003230 ORTHO05D003680 6.8e-10 67.8 77 49.4
Duzib205G1067 Durio zibethinus HOM05D003230 ORTHO05D003680 6.8e-10 67.8 84 47.6
Ca_11396_v3 Cicer arietinum L. HOM05D003230 ORTHO05D003680 8.8e-10 67.4 87 49.4
MELO3C005814.2 Cucumis melo HOM05D003230 ORTHO05D003680 8.8e-10 67.4 86 44.2
ATR0579G025 Amborella trichopoda HOM05D003230 ORTHO05D003680 2.0e-09 66.2 77 45.5
CsaV3_5G001330 Cucumis sativus L. HOM05D003230 ORTHO05D003680 2.0e-09 66.2 86 43.0
QL12p002913 Quercus lobata HOM05D003230 ORTHO05D003680 2.0e-09 66.2 85 45.9
Duzib084G0151 Durio zibethinus HOM05D003230 ORTHO05D003680 2.6e-09 65.9 84 45.2
ECA236G1073 Erigeron canadensis HOM05D003230 ORTHO05D003680 2.6e-09 65.9 74 48.6
Solyc03g096810.3 Solanum lycopersicum HOM05D003230 ORTHO05D003680 2.6e-09 65.9 77 51.9
Sopen03g027550 Solanum pennellii HOM05D003230 ORTHO05D003680 2.6e-09 65.9 77 51.9
CiPaw.12G073700 Carya illinoinensis HOM05D003230 ORTHO05D003680 4.4e-09 65.1 86 44.2
Eucgr.D02540 Eucalyptus grandis HOM05D003230 ORTHO05D003680 4.4e-09 65.1 84 45.2
Gohir.A02G094400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.4e-09 65.1 84 44.0
Gohir.A11G017400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.4e-09 65.1 83 43.4
Gohir.D03G089100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.4e-09 65.1 84 44.0
Gorai.003G072400 Gossypium raimondii HOM05D003230 ORTHO05D003680 4.4e-09 65.1 84 44.0
Lj5g0004131 Lotus japonicus HOM05D003230 ORTHO05D003680 4.4e-09 65.1 77 48.1
Hund08704 Selenicereus undatus HOM05D003230 ORTHO05D003680 4.4e-09 65.1 73 50.7
SEGI_40111 Sequoiadendron giganteum HOM05D003230 ORTHO05D003680 4.4e-09 65.1 80 48.8
Medtr1g116510 Medicago truncatula HOM05D003230 ORTHO05D003680 5.7e-09 64.7 77 48.1
PGSC0003DMG400000544 Solanum tuberosum HOM05D003230 ORTHO05D003680 5.7e-09 64.7 77 51.9
TPR.G10396 Trifolium pratense HOM05D003230 ORTHO05D003680 7.5e-09 64.3 72 50.0
TWI60G0278 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 7.5e-09 64.3 84 41.7
Gohir.A11G017300 Gossypium hirsutum HOM05D003230 ORTHO05D003680 9.8e-09 63.9 77 44.2
Gohir.D11G017200 Gossypium hirsutum HOM05D003230 ORTHO05D003680 9.8e-09 63.9 85 42.4
Gorai.007G018100 Gossypium raimondii HOM05D003230 ORTHO05D003680 9.8e-09 63.9 85 42.4
Lsat_1_v5_gn_0_9600 Lactuca sativa HOM05D003230 ORTHO05D003680 9.8e-09 63.9 74 48.6
MD14G1143500 Malus domestica HOM05D003230 ORTHO05D003680 9.8e-09 63.9 83 41.0
Psat6g240960 Pisum sativum HOM05D003230 ORTHO05D003680 9.8e-09 63.9 87 46.0
Gorai.008G262300 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.3e-08 63.5 84 40.5
Nitab4.5_0000021g0290 Nicotiana tabacum HOM05D003230 ORTHO05D003680 1.3e-08 63.5 90 50.0
ECA234G3139 Erigeron canadensis HOM05D003230 ORTHO05D003680 1.7e-08 63.2 81 43.2
Gohir.D11G017100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.7e-08 63.2 77 44.2
Gorai.007G018000 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.7e-08 63.2 77 44.2
Lj2A147G46 Lonicera japonica HOM05D003230 ORTHO05D003680 1.7e-08 63.2 85 43.5
Nitab4.5_0002691g0010 Nicotiana tabacum HOM05D003230 ORTHO05D003680 1.7e-08 63.2 90 48.9
Glyma.20G245400 Glycine max HOM05D003230 ORTHO05D003680 2.2e-08 62.8 84 42.9
Gorai.002G179600 Gossypium raimondii HOM05D003230 ORTHO05D003680 2.2e-08 62.8 86 40.7
HPP92_015201 Vanilla planifolia HOM05D003230 ORTHO05D003680 2.2e-08 62.8 84 39.3
EL10Ac3g06251 Beta vulgaris HOM05D003230 ORTHO05D003680 2.8e-08 62.4 77 45.5
THA.LOC104815499 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 2.8e-08 62.4 92 42.4
FvH4_5g10150 Fragaria vesca HOM05D003230 ORTHO05D003680 4.9e-08 61.6 81 46.9
RcHm_v2.0_Chr7g0188151 Rosa chinensis HOM05D003230 ORTHO05D003680 4.9e-08 61.6 85 47.1
Gohir.D12G244701 Gossypium hirsutum HOM05D003230 ORTHO05D003680 6.3e-08 61.2 84 39.3
Prupe.5G137500 Prunus persica HOM05D003230 ORTHO05D003680 6.3e-08 61.2 83 41.0
Ciclev10020756m.g Citrus clementina HOM05D003230 ORTHO05D003680 8.3e-08 60.8 82 46.3
Duzib068G0649 Durio zibethinus HOM05D003230 ORTHO05D003680 8.3e-08 60.8 84 44.0
ECA232G3091 Erigeron canadensis HOM05D000068 ORTHO05D000084 8.3e-08 60.8 78 43.6
Peaxi162Scf00542g00014 Petunia axillaris HOM05D003230 ORTHO05D003680 1.4e-07 60.1 100 42.0
QL02p026579 Quercus lobata HOM05D003230 ORTHO05D003680 1.4e-07 60.1 96 42.7
VMungo0720G2040 Vigna mungo HOM05D003230 ORTHO05D003680 1.4e-07 60.1 81 40.7
arahy.Tifrunner.gnm1.ann1.4JD467 Arachis hypogaea HOM05D003230 ORTHO05D003680 2.4e-07 59.3 83 42.2
arahy.Tifrunner.gnm1.ann1.X6Z9M4 Arachis hypogaea HOM05D003230 ORTHO05D003680 2.4e-07 59.3 83 42.2
Cc02_g00530 Coffea canephora HOM05D003230 ORTHO05D003680 2.4e-07 59.3 86 46.5
CARHR256220 Cardamine hirsuta HOM05D003230 ORTHO05D003680 3.1e-07 58.9 77 42.9
Gorai.008G059100 Gossypium raimondii HOM05D003230 ORTHO05D003680 3.1e-07 58.9 79 43.0
Lalb_Chr06g0164471 Lupinus albus HOM05D003230 ORTHO05D003680 4.1e-07 58.5 77 46.8
Phvul.007G004400 Phaseolus vulgaris HOM05D003230 ORTHO05D003680 5.4e-07 58.2 81 40.7
Gohir.A12G243700 Gossypium hirsutum HOM05D003230 ORTHO05D003680 9.2e-07 57.4 84 36.9
Lalb_Chr02g0144281 Lupinus albus HOM05D003230 ORTHO05D003680 1.2e-06 57.0 84 39.3
Potri.011G147500 Populus trichocarpa HOM05D003230 ORTHO05D003680 1.2e-06 57.0 73 45.2
AL6G44380 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 1.6e-06 56.6 77 40.3
AT1G33230 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 1.6e-06 56.6 77 42.9
CARHR032530 Cardamine hirsuta HOM05D003230 ORTHO05D003680 1.6e-06 56.6 85 40.0
Lalb_Chr21g0307571 Lupinus albus HOM05D003230 ORTHO05D003680 1.6e-06 56.6 87 41.4
Sabra16G0307300 Salix brachista HOM05D003230 ORTHO05D003680 2.0e-06 56.2 85 38.8
AL1G47600 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 2.7e-06 55.8 77 41.6
AT4G10430 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 2.7e-06 55.8 77 39.0
Thhalv10028773m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 3.5e-06 55.5 77 41.6
Oeu035876.1 Olea europaea HOM05D003230 ORTHO05D003680 3.5e-06 55.5 77 44.2
MSTRG.26946 Avicennia marina HOM05D003230 ORTHO05D003680 4.5e-06 55.1 73 47.9
COL.COLO4_20922 Corchorus olitorius HOM05D003230 ORTHO05D003680 4.5e-06 55.1 74 45.9
Rhsim09G0211400 Rhododendron simsii HOM05D003230 ORTHO05D003680 4.5e-06 55.1 84 42.9
Sp1g28680 Schrenkiella parvula HOM05D003230 ORTHO05D003680 4.5e-06 55.1 77 40.3
BcaC08g43889 Brassica carinata HOM05D003230 ORTHO05D003680 5.9e-06 54.7 86 34.9
Eucgr.E01133 Eucalyptus grandis HOM05D003230 ORTHO05D003680 5.9e-06 54.7 68 45.6


User provided reference genes

Program Settings