Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 2.4e-53 211.8 104 100.0
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 4.6e-52 207.6 102 99.0
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 4.8e-49 197.6 99 96.0
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.6e-47 191.8 104 85.6
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 4.4e-47 191.0 104 86.5
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 9.9e-47 189.9 104 85.6
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 6.4e-46 187.2 104 85.6
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 8.4e-46 186.8 102 87.3
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 8.4e-46 186.8 102 86.3
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 1.1e-45 186.4 102 86.3
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 1.9e-45 185.7 102 84.3
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 2.4e-45 185.3 102 85.3
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 3.2e-45 184.9 104 82.7
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.4e-45 184.1 104 81.7
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 7.1e-45 183.7 104 82.7
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 7.1e-45 183.7 104 82.7
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 7.1e-45 183.7 102 84.3
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 9.3e-45 183.3 104 82.7
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 9.3e-45 183.3 104 82.7
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 9.3e-45 183.3 102 85.3
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 9.3e-45 183.3 104 83.7
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 9.3e-45 183.3 104 81.7
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.6e-44 182.6 104 84.6
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.6e-44 182.6 104 81.7
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.6e-44 182.6 104 81.7
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.6e-44 182.6 104 84.6
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 1.6e-44 182.6 104 84.6
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.6e-44 182.6 104 80.8
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 2.1e-44 182.2 104 81.7
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 2.1e-44 182.2 104 80.8
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.1e-44 182.2 104 82.7
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 2.1e-44 182.2 102 82.4
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 2.7e-44 181.8 104 79.8
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 2.7e-44 181.8 102 82.4
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.7e-44 181.8 102 84.3
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.7e-44 181.8 102 84.3
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 3.5e-44 181.4 104 81.7
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 3.5e-44 181.4 104 81.7
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 3.5e-44 181.4 104 80.8
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 3.5e-44 181.4 104 80.8
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 3.5e-44 181.4 104 79.8
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 4.6e-44 181.0 104 82.7
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 6.0e-44 180.6 104 81.7
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.0e-44 180.6 104 80.8
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 6.0e-44 180.6 102 83.3
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 6.0e-44 180.6 104 82.7
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 7.9e-44 180.3 104 80.8
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 7.9e-44 180.3 104 80.8
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 7.9e-44 180.3 104 81.7
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 7.9e-44 180.3 102 81.4
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 7.9e-44 180.3 102 84.3
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 1.0e-43 179.9 104 81.7
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.0e-43 179.9 104 80.8
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 1.0e-43 179.9 104 80.8
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.0e-43 179.9 102 82.4
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 1.3e-43 179.5 102 81.4
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.3e-43 179.5 104 81.7
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.3e-43 179.5 104 80.8
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.3e-43 179.5 102 81.4
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.3e-43 179.5 102 81.4
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.3e-43 179.5 104 81.7
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.7e-43 179.1 102 83.3
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 1.7e-43 179.1 104 78.8
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 1.7e-43 179.1 102 81.4
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 2.3e-43 178.7 104 79.8
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.3e-43 178.7 104 79.8
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.0e-43 178.3 104 80.8
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.0e-43 178.3 104 80.8
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 3.0e-43 178.3 102 80.4
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 3.0e-43 178.3 104 80.8
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 3.0e-43 178.3 104 80.8
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 3.9e-43 177.9 102 83.3
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 3.9e-43 177.9 102 82.4
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 3.9e-43 177.9 102 80.4
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 3.9e-43 177.9 102 80.4
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 5.1e-43 177.6 104 78.8
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 5.1e-43 177.6 102 82.4
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 5.1e-43 177.6 104 79.8
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 5.1e-43 177.6 104 80.8
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 5.1e-43 177.6 104 79.8
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 6.6e-43 177.2 104 79.8
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 6.6e-43 177.2 104 79.8
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 6.6e-43 177.2 104 79.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 6.6e-43 177.2 104 79.8
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 6.6e-43 177.2 104 79.8
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 8.7e-43 176.8 104 78.8
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 8.7e-43 176.8 104 79.8
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.1e-42 176.4 102 81.4
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 1.1e-42 176.4 104 77.9
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 1.5e-42 176.0 104 78.8
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 1.5e-42 176.0 104 78.8
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 1.5e-42 176.0 104 78.8
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 1.5e-42 176.0 104 78.8
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 1.5e-42 176.0 104 78.8
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 1.5e-42 176.0 102 79.4
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.5e-42 176.0 102 82.4
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 79.8
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 78.8
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.9e-42 175.6 102 79.4
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.9e-42 175.6 102 79.4
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 78.8
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 78.8
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 78.8
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 79.8
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 79.8
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 1.9e-42 175.6 104 78.8
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.5e-42 175.3 102 79.4
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.5e-42 175.3 102 79.4
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.5e-42 175.3 104 77.9
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 2.5e-42 175.3 104 80.8
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 2.5e-42 175.3 104 80.8
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 3.3e-42 174.9 104 77.9
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 3.3e-42 174.9 102 78.4
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 4.3e-42 174.5 104 77.9
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 4.3e-42 174.5 102 80.4
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 4.3e-42 174.5 104 79.8
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 5.6e-42 174.1 104 78.8
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 5.6e-42 174.1 104 77.9
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 7.3e-42 173.7 102 79.4
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 7.3e-42 173.7 102 79.4
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 7.3e-42 173.7 102 78.4
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 7.3e-42 173.7 104 77.9
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 9.6e-42 173.3 102 79.4
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.3e-41 172.9 103 80.6
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.6e-41 172.6 104 77.9
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.1e-41 172.2 104 76.9
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 2.8e-41 171.8 104 78.8
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 2.8e-41 171.8 104 76.0
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 3.6e-41 171.4 104 75.0
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 4.8e-41 171.0 104 76.0
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 6.2e-41 170.6 102 78.4
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 6.2e-41 170.6 102 78.4
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 1.4e-40 169.5 104 77.9
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 1.4e-40 169.5 102 78.4
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 1.8e-40 169.1 104 77.9
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.8e-40 169.1 104 76.9
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 2.4e-40 168.7 104 77.9
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 3.1e-40 168.3 104 77.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.3e-40 167.5 100 77.0
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 5.3e-40 167.5 104 76.9
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 5.3e-40 167.5 104 75.0
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.6e-39 165.2 93 82.8
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 3.4e-39 164.9 103 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.4e-37 159.5 102 69.6
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.9e-37 159.1 102 70.6
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.4e-37 158.7 102 69.6
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 2.1e-36 155.6 101 73.3
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 2.8e-33 145.2 102 63.7
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 1.1e-32 143.3 100 68.0
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.8e-32 142.5 100 68.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.3e-32 141.0 79 79.7
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.2e-31 139.8 84 79.8
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 2.6e-31 138.7 100 66.0
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.7e-30 136.0 84 79.8
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 3.2e-29 131.7 79 73.4
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 2.5e-26 122.1 83 69.9
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 5.7e-26 120.9 104 52.9
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 2.1e-25 119.0 103 49.5
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.7e-25 118.2 102 59.8
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.5e-23 111.3 102 56.9
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 4.2e-21 104.8 92 51.1
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 1.0e-19 100.1 72 63.9
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 1.0e-19 100.1 91 49.5
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.1e-18 96.7 50 86.0
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.3e-18 95.1 82 53.7
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 1.4e-16 89.7 50 78.0
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 1.8e-16 89.4 93 46.2
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 1.8e-16 89.4 78 61.5


User provided reference genes

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