Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.3e-171 606.3 304 100.0
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 3.6e-113 412.1 258 77.1
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.0e-111 406.4 258 75.6
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.8e-110 402.5 287 69.3
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 4.8e-110 401.7 264 73.9
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 2.0e-108 396.4 257 74.3
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.7e-108 396.0 289 67.5
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 7.7e-108 394.4 257 74.3
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 7.7e-108 394.4 231 80.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 7.7e-108 394.4 263 73.0
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 7.7e-108 394.4 246 76.0
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.0e-107 394.0 258 72.9
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.0e-107 394.0 295 67.1
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.7e-107 393.3 248 75.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.7e-107 393.3 247 75.3
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.9e-107 392.5 264 72.0
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.9e-107 392.5 276 68.1
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.8e-107 392.1 261 73.6
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 6.6e-107 391.3 264 71.2
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 8.6e-107 391.0 302 66.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 8.6e-107 391.0 260 73.1
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.9e-106 389.8 246 74.8
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.5e-106 389.4 295 65.8
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 2.5e-106 389.4 293 66.2
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.3e-106 389.0 257 73.2
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 5.5e-106 388.3 259 72.6
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 5.5e-106 388.3 278 68.3
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-105 387.1 279 68.8
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-105 387.1 279 68.8
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.6e-105 386.7 297 64.3
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 2.8e-105 386.0 248 72.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.6e-105 385.6 293 64.8
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.6e-105 385.6 249 73.1
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 4.7e-105 385.2 288 67.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 4.7e-105 385.2 257 72.0
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 4.7e-105 385.2 306 63.4
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 1.0e-104 384.0 247 74.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.4e-104 383.6 258 71.3
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.8e-104 383.3 271 69.0
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 5.2e-104 381.7 257 68.9
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 6.8e-104 381.3 320 61.9
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.2e-103 380.6 286 66.8
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 2.0e-103 379.8 254 71.3
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.6e-103 379.4 299 63.5
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 5.7e-103 378.3 289 64.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 9.8e-103 377.5 257 71.2
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.3e-102 377.1 251 72.9
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.3e-102 377.1 257 70.8
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-102 377.1 296 62.8
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.7e-102 376.7 254 68.5
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.7e-102 376.7 255 71.4
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.7e-102 376.7 254 69.7
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.7e-102 376.7 277 65.3
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.7e-102 376.7 261 68.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.2e-102 376.3 291 64.6
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.2e-102 376.3 291 64.6
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 3.7e-102 375.6 268 66.8
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 3.7e-102 375.6 254 71.7
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 8.3e-102 374.4 257 70.4
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.1e-101 374.0 257 71.2
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.4e-101 373.6 302 62.6
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.4e-101 373.6 263 68.1
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.4e-101 372.9 269 65.8
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.4e-101 372.9 257 70.0
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-101 372.5 232 77.2
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.2e-101 372.5 257 70.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 4.1e-101 372.1 271 66.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 4.1e-101 372.1 232 76.3
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.4e-101 371.7 316 60.1
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.0e-101 371.3 259 68.0
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 7.0e-101 371.3 263 66.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 9.2e-101 370.9 257 70.4
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.6e-100 370.2 257 70.0
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.7e-100 369.4 256 67.2
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.5e-100 369.0 275 65.1
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 4.5e-100 368.6 257 69.6
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 4.5e-100 368.6 259 69.1
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.9e-100 368.2 277 65.7
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.9e-100 368.2 277 65.7
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 7.8e-100 367.9 278 65.5
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.3e-99 367.1 307 60.3
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.3e-99 366.3 232 76.3
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.6e-99 364.4 232 75.4
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.1e-98 364.0 257 69.6
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.5e-98 363.6 255 67.8
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-98 363.2 255 67.5
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.5e-98 362.8 263 67.3
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-98 362.5 273 65.6
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 4.3e-98 362.1 231 73.2
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 2.8e-97 359.4 231 74.0
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.1e-93 347.4 307 58.0
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 3.9e-91 339.0 262 64.5
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 5.0e-91 338.6 277 63.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 4.3e-90 335.5 265 60.4
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 4.7e-89 332.0 390 49.2
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 5.8e-87 325.1 256 59.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.2e-85 319.3 255 59.2
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 5.4e-85 318.5 298 57.0
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-84 316.6 239 66.5
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 6.6e-83 311.6 265 58.1
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 8.6e-83 311.2 194 74.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.2e-80 302.0 199 71.4
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 8.1e-73 278.1 209 67.0
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 5.2e-72 275.4 197 65.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.0e-71 273.5 201 71.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.9e-70 268.9 197 68.5
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.5e-66 256.5 183 68.3
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-59 232.3 157 72.6
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 5.6e-58 228.8 205 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 6.9e-56 221.9 220 52.7
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.5e-55 220.7 165 65.5
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.6e-55 219.9 189 58.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.8e-54 216.1 130 80.0
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.4e-53 213.4 176 63.6
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-52 211.1 171 64.3
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.3e-51 207.6 151 66.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-47 194.1 228 48.7
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.7e-46 190.7 124 68.5
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-41 174.1 157 59.9
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-41 174.1 157 60.5
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-41 172.6 156 60.3
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-41 171.8 157 59.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-40 170.2 173 55.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-40 169.5 157 60.5
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-39 167.9 157 58.6
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.8e-39 165.6 156 59.0
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-38 164.5 164 57.3
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-38 163.7 113 74.3
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.5e-37 160.2 104 74.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-36 156.0 144 59.7
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.3e-35 154.5 105 71.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 157 54.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 6.9e-32 142.1 165 50.9
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-31 139.0 160 51.9
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-31 139.0 160 51.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-30 137.1 125 59.2
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-30 137.1 123 60.2
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 2.2e-30 137.1 228 38.2
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-30 136.0 94 75.5
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.1e-29 134.8 88 69.3
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-29 134.4 107 67.3
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.2e-25 118.6 75 69.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 6.9e-24 115.5 109 57.8
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-23 114.4 156 46.8
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-19 100.9 138 44.2
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 8.8e-19 98.6 70 72.9
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-16 91.7 57 75.4
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-16 89.4 96 51.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.5e-15 86.7 55 70.9
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-15 86.3 94 52.1
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.3e-06 58.2 36 72.2


User provided reference genes

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