Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.7e-146 522.7 273 100.0
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.8e-101 371.7 300 66.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-100 370.5 291 67.4
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.7e-98 363.2 296 66.2
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.0e-98 361.7 294 65.3
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.3e-95 352.8 289 65.4
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.2e-93 346.3 296 63.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.2e-93 346.3 289 64.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.1e-92 342.4 286 62.9
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 5.3e-92 341.7 296 63.9
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 5.9e-91 338.2 294 62.9
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.2e-90 336.3 296 62.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.8e-90 335.5 290 63.1
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 3.8e-90 335.5 297 60.6
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.5e-90 334.7 290 62.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.2e-89 332.0 290 61.7
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 2.7e-88 329.3 297 60.9
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 4.7e-88 328.6 295 58.6
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 8.0e-88 327.8 295 58.6
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.8e-87 326.6 295 59.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.3e-87 326.2 295 60.7
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 2.3e-87 326.2 294 61.2
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 4.0e-87 325.5 295 59.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 5.2e-87 325.1 294 59.5
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 8.8e-87 324.3 297 60.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.5e-86 323.6 290 61.4
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 5.7e-86 321.6 297 59.6
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 5.7e-86 321.6 295 60.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.7e-86 321.6 295 58.3
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.5e-86 321.2 297 59.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.7e-85 320.1 294 59.5
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.2e-85 319.7 295 59.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.2e-85 319.7 295 59.3
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.8e-85 319.3 297 59.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.7e-85 318.9 295 61.4
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 4.8e-85 318.5 286 60.5
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 6.3e-85 318.2 291 59.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 8.3e-85 317.8 297 57.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.4e-84 317.0 298 60.1
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.8e-84 316.6 294 58.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.4e-84 316.2 295 61.0
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.6e-83 313.5 283 59.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.0e-83 313.2 280 60.7
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 4.5e-83 312.0 283 59.0
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.5e-83 312.0 299 58.5
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 7.7e-83 311.2 290 57.9
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.0e-82 310.8 294 57.8
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.3e-82 310.5 297 58.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 5.0e-82 308.5 295 57.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 5.0e-82 308.5 265 62.3
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 5.0e-82 308.5 290 58.6
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 6.6e-82 308.1 298 58.1
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.1e-81 307.4 292 58.9
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.5e-81 307.0 298 57.7
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.9e-81 306.6 294 56.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.5e-81 306.2 290 57.6
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.3e-81 305.8 294 56.5
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 4.2e-81 305.4 294 57.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 9.5e-81 304.3 298 57.0
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 9.5e-81 304.3 290 57.6
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 9.5e-81 304.3 297 56.9
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.2e-80 303.9 290 57.6
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.1e-80 303.1 298 56.0
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.8e-80 302.8 284 59.2
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.0e-79 299.3 297 56.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 6.8e-79 298.1 289 56.4
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.9e-79 297.7 308 56.2
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 5.7e-78 295.0 240 65.4
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.5e-78 294.7 297 56.6
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 7.5e-78 294.7 277 58.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 6.3e-77 291.6 278 57.2
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.3e-77 291.2 276 57.6
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.1e-76 290.8 290 55.2
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.1e-76 290.8 290 55.9
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.1e-76 290.8 298 55.7
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.4e-76 289.7 292 57.9
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.2e-76 289.3 286 58.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 3.2e-76 289.3 264 58.0
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.1e-76 288.9 231 65.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.2e-75 287.3 253 63.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-75 285.8 296 56.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.5e-75 285.8 298 53.4
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.5e-75 285.4 221 67.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 7.8e-75 284.6 287 57.5
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 7.8e-75 284.6 287 57.5
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 7.8e-75 284.6 287 57.5
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 7.8e-75 284.6 299 54.2
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.0e-74 284.3 296 56.4
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.3e-74 283.9 332 50.9
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.3e-74 283.1 257 66.1
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 5.0e-74 282.0 287 56.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 5.0e-74 282.0 220 65.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.1e-73 280.8 309 52.8
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.1e-73 280.8 287 56.8
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-73 280.8 261 58.6
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.3e-73 279.3 287 55.4
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.3e-73 278.9 286 55.9
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.3e-73 278.9 286 55.9
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.3e-73 278.9 286 55.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.3e-73 278.9 287 56.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 4.3e-73 278.9 254 58.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 7.3e-73 278.1 286 55.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 7.3e-73 278.1 254 59.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 9.5e-73 277.7 217 63.1
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-72 276.9 284 56.0
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.8e-72 276.2 286 56.6
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.6e-72 275.8 293 54.6
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.0e-71 274.2 294 54.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.1e-71 272.7 295 53.9
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 3.1e-71 272.7 287 53.7
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 5.2e-71 271.9 243 58.0
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.9e-69 266.2 282 54.6
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.0e-66 256.1 294 46.6
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.2e-64 250.8 246 55.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.1e-64 250.0 291 50.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 8.0e-64 248.1 242 55.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 9.8e-62 241.1 283 49.8
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-61 240.7 229 56.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.3e-61 240.7 281 47.0
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.9e-61 239.6 254 52.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 8.3e-61 238.0 225 57.3
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 8.3e-61 238.0 229 56.3
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.1e-55 221.1 272 47.4
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.5e-54 214.9 209 58.4
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 4.9e-53 212.2 250 49.6
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-48 196.8 210 55.7
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.9e-47 191.4 197 46.7
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-46 191.0 223 52.0
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.4e-46 189.5 197 46.7
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.9e-46 188.0 197 45.7
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-45 186.8 197 45.7
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.6e-40 169.5 144 60.4
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-38 164.5 130 65.4
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.1e-36 155.2 134 61.9
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-34 151.4 197 39.6
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.0e-31 139.4 146 54.1
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.9e-29 133.3 119 58.8
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-28 131.3 165 40.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-28 128.6 203 36.9
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.9e-27 125.2 228 41.7
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.6e-25 119.0 176 35.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 9.0e-23 111.7 158 45.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.7e-19 100.1 228 37.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.1e-16 90.5 91 46.2
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 5.3e-15 85.9 217 27.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.2e-14 84.7 83 55.4
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 7.9e-11 72.0 76 48.7
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-09 68.2 103 42.7
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.1e-09 68.2 103 42.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-09 67.0 74 47.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.3e-08 62.4 38 71.1
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.3e-08 62.4 38 71.1
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.1e-07 61.6 38 71.1
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.3e-07 59.3 38 68.4
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.0e-07 58.5 37 70.3


User provided reference genes

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