Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.3e-257 892.5 452 100.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 7.3e-187 657.5 442 75.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 3.7e-183 645.2 453 71.3
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.3e-180 636.0 444 72.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-179 633.6 444 72.1
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 7.3e-179 630.9 456 69.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.1e-178 629.4 454 70.3
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.6e-178 628.6 444 70.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.2e-178 627.9 444 70.5
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 4.4e-176 621.7 448 68.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 4.4e-176 621.7 444 70.3
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 4.4e-176 621.7 444 71.4
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.4e-174 616.7 444 69.6
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 9.2e-174 614.0 443 69.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.5e-173 612.1 443 70.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.5e-173 612.1 443 70.4
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 7.8e-173 610.9 444 69.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 7.8e-173 610.9 443 70.9
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.0e-172 609.0 444 68.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.1e-172 608.2 444 67.8
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.9e-171 606.3 444 67.8
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.3e-171 605.5 416 74.3
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.3e-171 605.1 444 68.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.3e-171 605.1 458 67.0
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 5.6e-171 604.7 444 70.9
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.2e-168 597.0 444 68.9
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.4e-168 595.5 445 67.6
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 3.4e-168 595.5 444 68.0
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.4e-168 595.1 444 67.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 4.4e-168 595.1 446 68.2
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.6e-168 594.3 449 68.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.2e-167 592.8 444 67.3
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 4.9e-167 591.7 444 67.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.2e-166 589.0 455 67.3
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 5.4e-166 588.2 442 66.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.7e-165 585.9 444 65.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 2.7e-165 585.9 469 64.8
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.5e-165 585.5 444 66.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.3e-164 583.6 444 66.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 3.0e-164 582.4 446 66.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 3.9e-164 582.0 414 70.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.9e-163 579.7 446 66.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.6e-163 577.4 444 65.8
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.3e-162 577.0 442 65.6
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.3e-162 577.0 442 65.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.3e-162 577.0 442 65.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.6e-162 576.6 445 65.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.6e-162 576.6 429 69.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.1e-162 576.2 447 65.5
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.1e-162 576.2 447 65.5
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.1e-162 576.2 442 66.1
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.6e-162 575.5 428 68.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.8e-162 575.1 442 65.6
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 4.8e-162 575.1 444 64.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.1e-161 573.9 449 65.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-161 573.5 447 65.3
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.8e-161 573.2 447 65.8
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.8e-161 573.2 444 66.2
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.4e-161 572.8 447 65.1
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.4e-161 572.8 447 65.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.4e-161 572.8 444 66.2
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 3.1e-161 572.4 458 62.9
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.0e-161 572.0 447 65.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 5.3e-161 571.6 447 64.9
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 5.3e-161 571.6 444 64.6
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.9e-161 571.2 443 65.7
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-160 569.7 448 64.7
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.0e-160 569.7 445 66.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.6e-160 569.3 447 64.7
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 5.8e-160 568.2 444 65.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 7.6e-160 567.8 447 64.9
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.2e-159 566.2 463 63.7
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.8e-159 565.5 449 65.5
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 6.4e-159 564.7 449 64.4
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 8.4e-159 564.3 445 65.6
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.9e-158 563.1 447 65.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.2e-158 562.0 448 65.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 4.2e-158 562.0 428 67.1
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 9.3e-158 560.8 446 63.9
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 9.3e-158 560.8 443 64.1
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 9.3e-158 560.8 442 64.9
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-157 560.5 449 64.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-157 560.5 443 64.1
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-157 560.5 443 64.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-157 559.7 449 63.9
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.7e-157 559.3 446 65.2
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.6e-157 558.5 443 63.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.3e-156 556.2 470 62.3
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.3e-156 556.2 440 64.8
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 3.0e-156 555.8 450 64.0
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.9e-156 555.4 448 64.3
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.9e-156 555.4 391 71.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.1e-156 555.1 467 62.1
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.1e-156 555.1 477 62.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 5.1e-156 555.1 440 64.3
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 6.7e-156 554.7 470 62.3
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.5e-155 552.7 464 63.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.7e-154 548.9 471 60.7
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 3.7e-154 548.9 455 63.5
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.8e-154 548.5 385 71.2
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.8e-153 546.6 428 64.7
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.2e-152 543.9 454 61.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 4.5e-152 542.0 463 61.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 2.9e-151 539.3 386 69.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.9e-151 539.3 488 59.8
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 8.4e-151 537.7 392 67.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.5e-149 532.3 543 54.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.6e-149 531.9 445 61.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.6e-147 525.0 444 61.7
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.5e-141 505.8 388 66.2
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.1e-140 501.9 429 60.6
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 6.7e-140 501.5 447 58.8
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.3e-139 498.8 443 56.2
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 5.7e-139 498.4 455 55.4
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 5.9e-136 488.4 452 57.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.8e-135 485.7 396 61.6
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.2e-134 482.6 443 54.2
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.2e-130 469.9 375 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 4.1e-129 465.7 442 52.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 7.9e-125 451.4 390 61.5
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-121 440.7 342 66.7
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-119 433.0 445 50.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 8.8e-116 421.4 445 49.4
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-115 420.6 445 49.4
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 7.4e-115 418.3 445 52.8
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 2.0e-112 410.2 448 48.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 7.7e-112 408.3 306 68.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.0e-108 396.0 440 53.4
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.7e-104 383.3 316 63.6
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.5e-102 375.6 443 45.4
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.7e-95 354.0 402 48.8
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.3e-94 349.7 254 70.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.2e-88 331.3 258 66.7
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.7e-82 309.7 306 55.6
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.6e-80 302.8 442 41.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 5.1e-71 272.7 188 70.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.2e-69 268.1 316 48.7
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.9e-58 229.6 447 35.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.7e-55 218.8 129 77.5
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 7.3e-54 215.7 193 57.5
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.9e-52 209.1 173 59.5
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.0e-51 207.6 158 67.1
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.0e-48 196.1 146 66.4
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.8e-37 160.6 121 71.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 3.1e-36 157.1 180 48.9
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.4e-34 149.1 135 57.0
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.2e-33 147.1 118 61.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 8.2e-29 132.5 94 68.1
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.6e-24 118.2 99 56.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 6.7e-23 112.8 112 50.9
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.3e-22 110.2 65 75.4
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 3.7e-13 80.5 59 66.1
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.1e-12 79.0 72 51.4
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 5.3e-12 76.6 45 77.8
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.5e-11 75.1 40 80.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.4e-11 73.9 65 60.0
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.2e-08 65.5 42 69.0


User provided reference genes

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