Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 9.3e-309 1062.8 558 100.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.9e-112 410.6 549 47.0
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.4e-109 399.8 546 46.9
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.4e-102 377.9 547 44.2
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.4e-102 377.9 568 44.7
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.3e-100 371.3 562 43.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.9e-100 370.2 577 43.8
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.7e-100 369.8 551 43.2
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 7.1e-99 365.5 554 43.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 9.2e-99 365.2 543 44.9
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.0e-97 361.7 546 44.0
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.7e-97 360.9 552 43.5
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.3e-97 360.5 558 41.8
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.6e-95 354.4 563 43.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 3.6e-95 353.2 545 43.3
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.4e-94 350.5 609 40.4
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 4.0e-94 349.7 549 42.8
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.0e-93 347.4 558 42.8
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.4e-93 346.7 561 41.5
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 4.4e-93 346.3 553 42.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 4.4e-93 346.3 552 42.8
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.2e-92 344.0 554 41.0
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.9e-92 342.8 565 40.5
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 8.4e-92 342.0 596 40.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.4e-91 341.3 550 40.5
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-91 341.3 553 42.9
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.4e-91 340.5 595 40.0
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 3.2e-91 340.1 553 43.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 9.3e-91 338.6 557 42.7
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.6e-90 337.8 565 42.5
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 2.1e-90 337.4 554 40.1
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.7e-90 337.0 556 41.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.7e-90 337.0 556 41.5
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.0e-90 335.9 557 40.6
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 7.8e-90 335.5 565 41.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.0e-89 335.1 566 41.7
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.7e-89 334.3 545 40.7
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.5e-88 331.3 554 41.2
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.5e-88 330.5 547 41.9
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 5.6e-88 329.3 553 40.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.3e-87 328.2 577 39.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.3e-87 328.2 552 41.3
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.6e-87 327.8 572 38.1
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.1e-87 327.4 573 38.9
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.8e-87 326.2 556 39.4
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 6.2e-87 325.9 565 41.4
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 6.2e-87 325.9 550 41.1
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 8.1e-87 325.5 572 39.2
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 8.1e-87 325.5 594 40.2
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.1e-86 325.1 574 39.0
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.8e-86 324.3 587 39.5
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.4e-86 323.9 550 40.7
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 5.3e-86 322.8 551 41.7
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 6.9e-86 322.4 564 39.9
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 6.9e-86 322.4 546 40.5
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-85 321.6 551 39.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 4.4e-85 319.7 557 40.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 9.9e-85 318.5 559 40.8
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.3e-84 318.2 547 41.0
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 4.9e-84 316.2 558 38.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.9e-84 316.2 558 39.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.4e-83 313.9 543 40.7
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 9.3e-83 312.0 572 37.9
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.1e-82 310.8 576 37.8
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 2.1e-82 310.8 589 37.9
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 7.9e-82 308.9 554 39.0
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.0e-81 308.5 558 38.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.3e-81 308.1 499 41.5
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.3e-81 307.4 559 39.4
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 2.3e-81 307.4 563 40.1
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.3e-81 307.4 558 38.2
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.3e-81 307.4 552 39.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.1e-80 305.1 547 38.9
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.5e-80 304.7 559 39.9
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.5e-80 303.9 548 38.7
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.6e-79 301.2 605 36.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 3.6e-79 300.1 584 37.7
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.1e-79 298.9 555 37.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 4.0e-78 296.6 570 38.2
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 5.8e-77 292.7 560 37.7
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.2e-76 290.8 544 37.7
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.9e-76 290.4 544 36.9
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 9.3e-75 285.4 544 37.9
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 9.3e-75 285.4 544 37.7
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 9.3e-75 285.4 551 38.5
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 2.7e-74 283.9 481 39.7
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.7e-74 283.9 556 35.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.0e-73 282.0 582 35.9
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 3.9e-73 280.0 545 37.2
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 6.7e-73 279.3 524 38.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 6.7e-73 279.3 550 37.1
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 5.3e-70 269.6 556 35.3
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.3e-70 269.6 379 42.7
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 5.3e-70 269.6 554 36.5
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 5.3e-70 269.6 546 37.2
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.4e-69 266.9 467 40.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.7e-68 264.6 589 35.1
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 3.8e-68 263.5 575 35.7
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.1e-67 259.2 369 41.5
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.7e-65 252.7 547 36.0
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.1e-62 245.4 478 36.4
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 4.5e-61 240.0 504 34.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 4.5e-61 240.0 504 34.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.7e-60 238.0 495 37.2
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.5e-59 233.0 314 45.2
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 5.5e-59 233.0 323 43.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.9e-57 226.9 595 32.4
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.4e-54 218.4 567 33.5
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 6.9e-54 216.1 304 43.4
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 5.5e-51 206.5 489 33.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 5.0e-44 183.3 304 41.1
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 6.1e-42 176.4 394 37.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.7e-39 167.2 418 34.4
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.4e-38 165.2 577 29.3
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 2.4e-38 164.5 592 30.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.5e-35 155.2 538 28.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 2.6e-32 144.4 192 42.2
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.6e-32 144.4 458 31.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 6.3e-31 139.8 459 32.0
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 4.1e-30 137.1 280 35.0
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.7e-24 116.7 375 30.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 8.3e-23 112.8 258 37.2
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 8.8e-17 92.8 63 65.1
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 5.7e-16 90.1 247 31.6
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 5.4e-14 83.6 125 33.6
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.3e-12 78.2 213 31.9
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.1e-11 75.9 317 26.8
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 8.0e-10 69.7 146 39.7
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.4e-09 68.9 144 31.9
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 4.0e-09 67.4 181 35.9
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.4e-08 64.3 100 46.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 7.5e-08 63.2 133 33.8
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 8.3e-07 59.7 102 38.2
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 8.3e-07 59.7 102 38.2
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 8.3e-07 59.7 102 38.2
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 8.3e-07 59.7 102 38.2
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 8.3e-07 59.7 102 38.2
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 8.3e-07 59.7 102 38.2
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.4e-06 58.9 212 31.6
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 2.4e-06 58.2 37 67.6


User provided reference genes

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