Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 6.1e-65 250.8 134 100.0
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 8.9e-24 114.0 110 63.6
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 1.7e-22 109.8 108 56.5
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 2.2e-22 109.4 107 59.8
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 6.4e-22 107.8 99 61.6
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.4e-21 106.7 108 57.4
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.4e-21 105.9 108 56.5
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 3.2e-21 105.5 108 56.5
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 3.2e-21 105.5 108 56.5
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 7.1e-21 104.4 100 59.0
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 2.1e-20 102.8 99 60.6
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.1e-20 102.8 100 60.0
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.1e-20 102.8 101 58.4
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.6e-20 101.7 100 60.0
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 6.0e-20 101.3 88 62.5
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.0e-19 100.5 108 55.6
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.0e-19 100.5 108 55.6
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 1.3e-19 100.1 109 54.1
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.3e-19 100.1 108 56.5
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.7e-19 99.8 108 53.7
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 2.3e-19 99.4 98 57.1
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 3.0e-19 99.0 100 60.0
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.0e-19 99.0 108 52.8
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 3.9e-19 98.6 108 51.9
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 5.1e-19 98.2 108 53.7
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 5.1e-19 98.2 108 53.7
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 5.1e-19 98.2 109 54.1
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 6.6e-19 97.8 109 54.1
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 1.1e-18 97.1 109 53.2
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.1e-18 97.1 105 58.1
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.5e-18 96.7 108 52.8
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 1.5e-18 96.7 109 51.4
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.5e-18 96.7 91 61.5
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 1.5e-18 96.7 108 51.9
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 1.9e-18 96.3 89 58.4
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.9e-18 96.3 101 58.4
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.9e-18 96.3 101 55.4
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 2.5e-18 95.9 98 56.1
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 4.3e-18 95.1 91 59.3
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 5.6e-18 94.7 100 57.0
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 7.3e-18 94.4 106 53.8
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 7.3e-18 94.4 108 51.9
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 7.3e-18 94.4 109 54.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 7.3e-18 94.4 91 58.2
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 9.5e-18 94.0 109 51.4
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 1.2e-17 93.6 109 52.3
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-17 93.6 108 50.9
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 2.1e-17 92.8 91 57.1
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.6e-17 92.0 108 50.9
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.6e-17 92.0 98 54.1
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.7e-17 91.7 109 50.5
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 4.7e-17 91.7 90 58.9
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.2e-17 91.3 110 50.0
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 8.1e-17 90.9 98 56.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.1e-16 90.5 110 50.0
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.1e-16 90.5 91 56.0
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.4e-16 90.1 110 50.0
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.8e-16 89.7 99 57.6
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.8e-16 89.7 95 54.7
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.8e-16 89.7 110 50.0
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 2.3e-16 89.4 92 56.5
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.3e-16 89.4 92 56.5
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.3e-16 89.4 92 56.5
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.1e-16 89.0 91 57.1
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 3.1e-16 89.0 95 52.6
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 3.1e-16 89.0 107 49.5
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 4.0e-16 88.6 110 49.1
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.0e-16 88.6 90 58.9
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 4.0e-16 88.6 104 51.0
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.0e-16 88.6 110 49.1
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.0e-16 88.6 127 43.3
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.2e-16 88.2 95 53.7
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 5.2e-16 88.2 87 56.3
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 6.8e-16 87.8 97 51.5
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 8.9e-16 87.4 108 50.0
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.2e-15 87.0 95 52.6
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.5e-15 86.7 100 53.0
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.5e-15 86.7 101 56.4
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.5e-15 86.7 107 48.6
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.0e-15 86.3 110 47.3
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 2.6e-15 85.9 109 52.3
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.6e-15 85.9 111 49.5
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.6e-15 85.9 95 54.7
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.6e-15 85.9 111 49.5
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 2.6e-15 85.9 91 57.1
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.4e-15 85.5 95 54.7
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.4e-15 85.5 89 56.2
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.4e-15 85.5 107 48.6
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.4e-15 85.1 107 47.7
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 5.8e-15 84.7 95 53.7
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.8e-15 84.7 100 51.0
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.8e-15 84.7 100 51.0
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 7.6e-15 84.3 110 48.2
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 7.6e-15 84.3 98 50.0
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 7.6e-15 84.3 101 53.5
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.6e-15 84.3 103 49.5
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 9.9e-15 84.0 111 48.6
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 9.9e-15 84.0 111 48.6
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 9.9e-15 84.0 116 49.1
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 9.9e-15 84.0 109 46.8
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 1.3e-14 83.6 74 66.2
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 1.7e-14 83.2 101 54.5
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.7e-14 83.2 98 49.0
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.2e-14 82.8 92 53.3
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.9e-14 82.4 101 49.5
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 2.9e-14 82.4 91 53.8
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.9e-14 82.4 102 52.0
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 3.7e-14 82.0 80 56.2
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 4.9e-14 81.6 98 49.0
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 6.4e-14 81.3 98 49.0
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 6.4e-14 81.3 97 54.6
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 8.4e-14 80.9 125 44.0
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.1e-13 80.5 98 50.0
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.1e-13 80.5 98 49.0
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.4e-13 80.1 91 53.8
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.9e-13 79.7 95 52.6
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.9e-13 79.7 91 54.9
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.4e-13 79.3 98 50.0
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.4e-13 79.3 100 48.0
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.2e-13 79.0 109 45.0
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 3.2e-13 79.0 89 56.2
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 4.1e-13 78.6 89 50.6
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.1e-13 77.8 107 45.8
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.1e-13 77.8 107 45.8
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 7.1e-13 77.8 107 45.8
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.6e-12 76.6 72 59.7
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.6e-12 76.6 89 55.1
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.6e-12 76.6 110 46.4
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.1e-12 76.3 97 45.4
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.1e-12 76.3 105 46.7
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 2.7e-12 75.9 74 59.5
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.7e-12 75.9 97 48.5
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.7e-12 75.9 89 51.7
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.5e-12 75.5 110 49.1
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 4.6e-12 75.1 97 48.5
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 6.0e-12 74.7 107 43.9
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.0e-11 73.9 106 46.2
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 3.0e-11 72.4 120 43.3
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 3.9e-11 72.0 89 51.7
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 5.1e-11 71.6 122 40.2
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.6e-11 70.9 95 46.3
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 8.6e-11 70.9 116 44.0
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.9e-10 69.7 89 50.6
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.3e-10 68.9 107 42.1
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 3.3e-10 68.9 88 47.7
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 4.3e-10 68.6 79 50.6
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 5.6e-10 68.2 101 41.6
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 9.6e-10 67.4 91 47.3
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 1.2e-09 67.0 117 42.7
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 1.2e-09 67.0 117 42.7
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 1.6e-09 66.6 72 52.8
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.1e-09 66.2 90 45.6
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 4.7e-09 65.1 87 49.4
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 4.7e-09 65.1 83 50.6
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 6.2e-09 64.7 85 42.4
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.1e-08 63.9 87 42.5
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 3.1e-08 62.4 88 44.3
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 4.0e-08 62.0 53 56.6
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 6.8e-08 61.2 52 59.6
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 1.5e-07 60.1 42 66.7
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 1.5e-07 60.1 108 36.1
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 1.5e-07 60.1 48 68.8
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 2.0e-07 59.7 86 43.0
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 2.0e-07 59.7 86 41.9
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 2.0e-07 59.7 54 55.6
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 2.6e-07 59.3 87 42.5
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.6e-07 59.3 69 55.1
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.6e-07 59.3 69 55.1
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 2.6e-07 59.3 108 39.8
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 3.4e-07 58.9 87 40.2
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 4.4e-07 58.5 82 46.3
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 4.4e-07 58.5 60 51.7
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 5.8e-07 58.2 132 35.6
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 7.6e-07 57.8 53 56.6
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 9.9e-07 57.4 100 42.0
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 1.7e-06 56.6 93 41.9
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-06 56.6 69 52.2
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.7e-06 56.6 62 53.2
Pp3c15_12320 Physcomitrium patens HOM05D003660 ORTHO05D003415 3.8e-06 55.5 94 41.5
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 8.4e-06 54.3 87 37.9
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.4e-06 54.3 67 52.2


User provided reference genes

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