Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.3e-122 442.2 217 100.0
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.0e-77 293.9 205 66.3
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.3e-77 293.5 206 68.4
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 3.0e-77 292.4 206 68.0
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 5.0e-77 291.6 206 67.5
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.5e-76 290.0 205 68.8
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.9e-76 289.7 205 67.3
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.5e-76 289.3 205 66.8
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 3.3e-76 288.9 204 66.7
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.7e-75 285.0 206 66.0
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 6.2e-75 284.6 206 66.0
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 8.1e-75 284.3 204 65.2
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.1e-74 283.9 213 62.4
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.1e-74 283.9 205 65.9
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.4e-74 283.5 204 64.2
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 2.3e-74 282.7 206 65.5
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 4.0e-74 282.0 208 64.4
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.2e-74 281.6 211 63.5
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 6.8e-74 281.2 205 64.4
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 6.8e-74 281.2 205 64.9
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.5e-73 280.0 204 63.7
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.5e-73 280.0 204 63.7
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.0e-73 279.6 211 63.5
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 3.4e-73 278.9 205 63.9
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 3.4e-73 278.9 204 63.7
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 3.4e-73 278.9 204 63.7
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 4.4e-73 278.5 203 66.0
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 4.4e-73 278.5 205 64.9
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.8e-73 278.1 205 65.4
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 7.5e-73 277.7 205 64.4
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 7.5e-73 277.7 205 64.9
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 2.2e-72 276.2 211 62.6
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 2.9e-72 275.8 209 63.2
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.9e-72 275.8 206 64.6
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 6.4e-72 274.6 206 63.6
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 8.3e-72 274.2 205 64.4
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 8.3e-72 274.2 206 61.7
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.1e-71 273.9 210 63.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.1e-71 273.9 212 63.2
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.1e-71 273.9 211 63.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.4e-71 273.5 203 67.5
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 2.4e-71 272.7 205 64.4
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.1e-71 271.9 211 61.6
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.1e-70 269.6 210 60.5
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.7e-70 269.2 209 60.8
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.5e-70 268.9 203 64.5
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 3.5e-70 268.9 208 60.6
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 3.5e-70 268.9 208 60.6
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 6.0e-70 268.1 212 62.3
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 6.0e-70 268.1 214 59.3
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.0e-69 267.3 203 63.1
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.3e-69 266.9 205 62.0
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.3e-69 266.2 206 62.1
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 3.0e-69 265.8 203 62.1
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 3.0e-69 265.8 215 57.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 3.9e-69 265.4 209 60.8
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 6.6e-69 264.6 204 62.3
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.1e-68 263.8 203 63.5
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.1e-68 263.8 204 61.3
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.5e-68 263.5 205 60.5
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.9e-68 263.1 205 61.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.9e-68 263.1 205 61.0
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 3.3e-68 262.3 205 59.0
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.3e-68 261.9 205 61.5
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 7.3e-68 261.2 205 60.5
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 9.5e-68 260.8 209 58.9
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-67 260.4 200 64.0
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.6e-67 260.0 209 59.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.1e-67 259.6 200 62.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.8e-67 259.2 203 62.6
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 3.6e-67 258.8 201 63.2
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 3.6e-67 258.8 201 63.2
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 4.7e-67 258.5 200 63.5
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 6.2e-67 258.1 200 63.0
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 8.1e-67 257.7 200 63.0
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.1e-66 257.3 204 58.3
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 1.4e-66 256.9 200 62.5
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.4e-66 256.9 203 61.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 2.3e-66 256.1 206 60.7
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.3e-66 256.1 204 57.8
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 3.1e-66 255.8 205 60.5
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 4.0e-66 255.4 203 61.6
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 8.9e-66 254.2 203 62.6
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 3.4e-65 252.3 205 60.0
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 4.4e-65 251.9 203 61.1
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 4.4e-65 251.9 203 61.1
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 7.6e-65 251.1 207 59.4
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.3e-64 250.4 205 60.0
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.9e-64 249.2 209 57.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.8e-64 248.8 195 63.6
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 4.9e-64 248.4 203 57.1
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 6.4e-64 248.1 203 60.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 7.1e-63 244.6 200 60.0
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 1.6e-62 243.4 215 54.4
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.0e-61 240.7 200 59.0
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-61 240.4 201 60.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.7e-61 240.0 197 60.4
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.3e-61 239.6 191 61.3
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 8.6e-61 237.7 205 57.1
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-60 236.9 208 54.3
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.4e-58 230.3 262 46.9
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.8e-58 229.9 200 53.5
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 2.4e-58 229.6 170 63.5
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 6.9e-58 228.0 188 60.6
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 5.8e-57 224.9 200 59.0
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 9.9e-57 224.2 154 67.5
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.2e-56 223.0 209 52.2
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 2.2e-56 223.0 154 65.6
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.2e-56 223.0 158 65.8
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.9e-56 222.6 204 54.4
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 6.4e-56 221.5 205 55.1
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-55 220.7 183 59.6
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 4.2e-55 218.8 160 65.0
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.3e-55 217.6 204 52.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 9.3e-55 217.6 211 51.7
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-54 217.2 200 57.0
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.7e-54 216.1 204 52.5
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.7e-54 216.1 209 53.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.0e-53 212.6 156 61.5
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 3.0e-53 212.6 167 62.9
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.8e-51 205.3 201 50.2
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 6.2e-51 204.9 150 62.7
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.4e-50 203.8 211 52.1
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 2.9e-48 196.1 191 55.0
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 6.4e-48 194.9 209 45.0
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 6.4e-48 194.9 161 59.6
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.2e-47 192.6 168 53.0
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.3e-45 187.2 139 63.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.1e-43 179.9 155 60.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.8e-43 179.5 200 45.0
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 5.3e-42 175.3 203 49.3
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.0e-41 173.3 147 51.7
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.6e-41 172.9 209 46.9
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 8.4e-40 167.9 205 45.9
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 4.2e-39 165.6 214 42.5
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 7.1e-39 164.9 155 54.2
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.0e-37 159.5 203 46.3
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.8e-34 150.2 208 43.3
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.6e-33 146.4 207 36.7
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.5e-33 145.6 207 40.1
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.4e-31 140.6 200 38.0
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.2e-31 139.0 113 61.9
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 4.2e-31 139.0 86 72.1
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 4.6e-30 135.6 104 65.4
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 2.5e-28 129.8 180 37.2
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 5.0e-24 115.5 95 58.9
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.5e-23 113.2 203 35.0
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 2.5e-23 113.2 127 42.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 2.1e-22 110.2 203 34.0
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.8e-19 99.8 70 65.7
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.0e-17 93.6 90 54.4
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.9e-16 89.7 175 37.7
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.1e-15 87.8 82 53.7
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.0e-13 79.7 207 33.3
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.2e-11 73.6 73 53.4
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 6.3e-11 72.0 78 46.2


User provided reference genes

Program Settings