Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3229 Ceratophyllum demersum HOM05D002971 ORTHO05D003358 5.6e-46 187.2 91 100.0
CDE02G3769 Ceratophyllum demersum HOM05D002971 ORTHO05D003358 7.6e-27 123.6 132 55.3
MBI17_g08360_MAGBIO Magnolia biondii HOM05D002971 ORTHO05D003358 1.8e-15 85.9 88 50.0
Cfa016604 Carpinus fangiana HOM05D002971 ORTHO05D003358 2.2e-13 79.0 58 60.3
CiPaw.10G009300 Carya illinoinensis HOM05D002971 ORTHO05D003358 2.8e-13 78.6 77 49.4
Haze_19606 Corylus avellana HOM05D002971 ORTHO05D003358 6.3e-13 77.4 55 61.8
Gohir.A01G206600 Gossypium hirsutum HOM05D002971 ORTHO05D003358 1.8e-12 75.9 89 40.4
Glyma.13G153400 Glycine max HOM05D002971 ORTHO05D003358 2.4e-12 75.5 87 46.0
Phvul.007G227500 Phaseolus vulgaris HOM05D002971 ORTHO05D003358 2.4e-12 75.5 87 44.8
QL07p038814 Quercus lobata HOM05D002971 ORTHO05D003358 3.1e-12 75.1 78 44.9
QL07p039076 Quercus lobata HOM05D002971 ORTHO05D003358 3.1e-12 75.1 78 44.9
Glyma.10G072000 Glycine max HOM05D002971 ORTHO05D003358 4.1e-12 74.7 58 58.6
COL.COLO4_29740 Corchorus olitorius HOM05D002971 ORTHO05D003358 5.3e-12 74.3 81 48.1
Nn2g14154 Nelumbo nucifera HOM05D002971 ORTHO05D003358 6.9e-12 73.9 55 60.0
Dinv21212 Davidia involucrata HOM05D002971 ORTHO05D003358 9.1e-12 73.6 84 45.2
Glyma.19G194900 Glycine max HOM05D002971 ORTHO05D003358 1.2e-11 73.2 55 56.4
Gorai.002G240200 Gossypium raimondii HOM05D002971 ORTHO05D003358 1.2e-11 73.2 89 40.4
Lj1g0014395 Lotus japonicus HOM05D002971 ORTHO05D003358 1.2e-11 73.2 58 56.9
VMungo1383G3159 Vigna mungo HOM05D002971 ORTHO05D003358 1.2e-11 73.2 58 53.4
Duzib093G0696 Durio zibethinus HOM05D002971 ORTHO05D003358 1.5e-11 72.8 55 56.4
TWI53G1371 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 1.5e-11 72.8 58 55.2
Ciclev10012842m.g Citrus clementina HOM05D002971 ORTHO05D003358 2.0e-11 72.4 55 56.4
Phvul.001G189900 Phaseolus vulgaris HOM05D002971 ORTHO05D003358 2.0e-11 72.4 55 56.4
CiPaw.09G013500 Carya illinoinensis HOM05D002971 ORTHO05D003358 2.6e-11 72.0 80 45.0
Duzib106G1893 Durio zibethinus HOM05D002971 ORTHO05D003358 2.6e-11 72.0 58 55.2
Gohir.A04G063385 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.6e-11 72.0 55 60.0
Sc20g0006270 Simmondsia chinensis HOM05D002971 ORTHO05D003358 2.6e-11 72.0 58 55.2
TWI74G0300 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 4.5e-11 71.2 58 53.4
Glyma.03G195300 Glycine max HOM05D002971 ORTHO05D003358 5.9e-11 70.9 55 56.4
Gohir.D01G196000 Gossypium hirsutum HOM05D002971 ORTHO05D003358 5.9e-11 70.9 72 47.2
TAR633G0958 Trochodendron aralioides HOM05D002971 ORTHO05D003358 5.9e-11 70.9 58 53.4
HPP92_006353 Vanilla planifolia HOM05D002971 ORTHO05D003358 5.9e-11 70.9 57 54.4
CANSAT80G2111 Cannabis sativa HOM05D002971 ORTHO05D003358 7.7e-11 70.5 55 58.2
FvH4_6g18630 Fragaria vesca HOM05D002971 ORTHO05D003358 7.7e-11 70.5 58 55.2
FAN05G3027 Fragaria x ananassa HOM05D002971 ORTHO05D003358 7.7e-11 70.5 58 55.2
FAN05G5184 Fragaria x ananassa HOM05D002971 ORTHO05D003358 7.7e-11 70.5 58 55.2
FAN14G2272 Fragaria x ananassa HOM05D002971 ORTHO05D003358 7.7e-11 70.5 58 55.2
ATR0016G013 Amborella trichopoda HOM05D002971 ORTHO05D003358 1.0e-10 70.1 54 55.6
MD12G1035800 Malus domestica HOM05D002971 ORTHO05D003358 1.0e-10 70.1 58 53.4
Prupe.7G110700 Prunus persica HOM05D002971 ORTHO05D003358 1.0e-10 70.1 78 42.3
RcHm_v2.0_Chr3g0473581 Rosa chinensis HOM05D002971 ORTHO05D003358 1.0e-10 70.1 58 53.4
CsaV3_3G037250 Cucumis sativus L. HOM05D002971 ORTHO05D003358 1.3e-10 69.7 58 53.4
Gohir.D04G100100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 1.3e-10 69.7 52 59.6
Gorai.009G403000 Gossypium raimondii HOM05D002971 ORTHO05D003358 1.3e-10 69.7 52 59.6
Eucgr.K02045 Eucalyptus grandis HOM05D002971 ORTHO05D003358 1.7e-10 69.3 58 53.4
Hma1.2p1_0232F.1_g097870 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 1.7e-10 69.3 57 54.4
Sed0013825 Sechium edule HOM05D002971 ORTHO05D003358 1.7e-10 69.3 58 53.4
Thecc.05G088600 Theobroma cacao HOM05D002971 ORTHO05D003358 1.7e-10 69.3 58 53.4
EL10Ac7g16920 Beta vulgaris HOM05D002971 ORTHO05D003358 2.2e-10 68.9 58 51.7
Cc06_g05710 Coffea canephora HOM05D002971 ORTHO05D003358 2.2e-10 68.9 85 43.5
Gohir.1Z049556 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.2e-10 68.9 52 59.6
PGR004G2629 Punica granatum HOM05D002971 ORTHO05D003358 2.2e-10 68.9 58 53.4
Thecc.09G283900 Theobroma cacao HOM05D002971 ORTHO05D003358 2.2e-10 68.9 58 51.7
Cpa.g.sc5.23 Carica papaya HOM05D002971 ORTHO05D003358 2.9e-10 68.6 55 56.4
Aqoxy4G02781 Aquilegia oxysepala HOM05D002971 ORTHO05D003358 3.8e-10 68.2 50 58.0
ClCG10G019000 Citrullus lanatus HOM05D002971 ORTHO05D003358 3.8e-10 68.2 58 51.7
MELO3C009470.2 Cucumis melo HOM05D002971 ORTHO05D003358 3.8e-10 68.2 58 51.7
MD14G1022500 Malus domestica HOM05D002971 ORTHO05D003358 3.8e-10 68.2 58 53.4
COL.COLO4_19881 Corchorus olitorius HOM05D002971 ORTHO05D003358 5.0e-10 67.8 58 50.0
THA.LOC104827509 Tarenaya hassleriana HOM05D002971 ORTHO05D003358 5.0e-10 67.8 58 50.0
CARHR162610 Cardamine hirsuta HOM05D002971 ORTHO05D003358 6.5e-10 67.4 57 50.9
FAN02G2601 Fragaria x ananassa HOM05D002971 ORTHO05D003358 6.5e-10 67.4 55 54.5
Duzib168G2399 Durio zibethinus HOM05D002971 ORTHO05D003358 1.4e-09 66.2 58 50.0
THA.LOC104804934 Tarenaya hassleriana HOM05D002971 ORTHO05D003358 1.4e-09 66.2 58 50.0
arahy.Tifrunner.gnm1.ann1.36VPXF Arachis hypogaea HOM05D002971 ORTHO05D003358 1.9e-09 65.9 55 50.9
arahy.Tifrunner.gnm1.ann1.V363MI Arachis hypogaea HOM05D002971 ORTHO05D003358 1.9e-09 65.9 55 50.9
Duzib128G1708 Durio zibethinus HOM05D002971 ORTHO05D003358 1.9e-09 65.9 58 48.3
PSO384G1229 Papaver somniferum HOM05D002971 ORTHO05D003358 1.9e-09 65.9 75 42.7
MSTRG.26640 Avicennia marina HOM05D002971 ORTHO05D003358 2.5e-09 65.5 58 50.0
Rhsim03G0075700 Rhododendron simsii HOM05D002971 ORTHO05D003358 2.5e-09 65.5 57 56.1
Ca_09002_v3 Cicer arietinum L. HOM05D002971 ORTHO05D003358 4.2e-09 64.7 58 48.3
Nn6g34905 Nelumbo nucifera HOM05D002971 ORTHO05D003358 4.2e-09 64.7 56 53.6
Duzib150G0794 Durio zibethinus HOM05D002971 ORTHO05D003358 5.5e-09 64.3 58 48.3
Manes.09G055700 Manihot esculenta HOM05D002971 ORTHO05D003358 5.5e-09 64.3 63 52.4
Actinidia07928 Actinidia chinensis HOM05D002971 ORTHO05D003358 7.2e-09 63.9 56 55.4
Medtr7g104540 Medicago truncatula HOM05D002971 ORTHO05D003358 9.4e-09 63.5 55 50.9
PSO339G3111 Papaver somniferum HOM05D002971 ORTHO05D003358 9.4e-09 63.5 57 54.4
PSO384G0091 Papaver somniferum HOM05D002971 ORTHO05D003358 9.4e-09 63.5 57 54.4
SGA_v2.0_scaffold13G06720 Striga asiatica HOM05D002971 ORTHO05D003358 9.4e-09 63.5 78 41.0
Aa31LG10G7750 Aethionema arabicum HOM05D002971 ORTHO05D003358 1.2e-08 63.2 63 49.2
AT3G52740 Arabidopsis thaliana HOM05D002971 ORTHO05D003358 1.2e-08 63.2 57 47.4
BcaB02g07819 Brassica carinata HOM05D002971 ORTHO05D003358 1.2e-08 63.2 58 48.3
BcaC02g09225 Brassica carinata HOM05D002971 ORTHO05D003358 1.2e-08 63.2 57 49.1
A04p06720 Brassica napus HOM05D002971 ORTHO05D003358 1.2e-08 63.2 57 47.4
C04p40200 Brassica napus HOM05D002971 ORTHO05D003358 1.2e-08 63.2 57 49.1
BolC4t25597H Brassica oleracea HOM05D002971 ORTHO05D003358 1.2e-08 63.2 57 49.1
BraA04t16376Z Brassica rapa HOM05D002971 ORTHO05D003358 1.2e-08 63.2 57 47.4
Nitab4.5_0001977g0010 Nicotiana tabacum HOM05D002971 ORTHO05D003358 1.2e-08 63.2 56 55.4
MSTRG.19258 Avicennia marina HOM05D002971 ORTHO05D003358 1.6e-08 62.8 59 52.5
BcaB02g08556 Brassica carinata HOM05D002971 ORTHO05D003358 1.6e-08 62.8 58 48.3
Lj3P997T43 Lonicera japonica HOM05D002971 ORTHO05D003358 1.6e-08 62.8 61 49.2
CSS0036986 Camellia sinensis var. sinensis HOM05D002971 ORTHO05D003358 2.1e-08 62.4 60 56.7
Dinv29481 Davidia involucrata HOM05D002971 ORTHO05D003358 2.1e-08 62.4 60 48.3
Gohir.A05G081100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.1e-08 62.4 59 47.5
Gohir.D05G084100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.1e-08 62.4 59 47.5
Gorai.009G085900 Gossypium raimondii HOM05D002971 ORTHO05D003358 2.1e-08 62.4 59 47.5
TPR.G19528 Trifolium pratense HOM05D002971 ORTHO05D003358 2.1e-08 62.4 55 49.1
Sp5g09590 Schrenkiella parvula HOM05D002971 ORTHO05D003358 2.7e-08 62.0 57 45.6
BcaC07g39639 Brassica carinata HOM05D002971 ORTHO05D003358 3.6e-08 61.6 57 45.6
C08p28020 Brassica napus HOM05D002971 ORTHO05D003358 3.6e-08 61.6 57 45.6
BolC8t50414H Brassica oleracea HOM05D002971 ORTHO05D003358 3.6e-08 61.6 57 45.6
BraA09t40044Z Brassica rapa HOM05D002971 ORTHO05D003358 3.6e-08 61.6 57 45.6
Potri.009G163900 Populus trichocarpa HOM05D002971 ORTHO05D003358 3.6e-08 61.6 58 48.3
unitig_578.g16374 Utricularia gibba HOM05D002971 ORTHO05D003358 3.6e-08 61.6 58 43.1
Carub.0005s1919 Capsella rubella HOM05D002971 ORTHO05D003358 4.7e-08 61.2 54 51.9
Eucgr.E02817 Eucalyptus grandis HOM05D002971 ORTHO05D003358 4.7e-08 61.2 58 43.1
QL01p012303 Quercus lobata HOM05D002971 ORTHO05D003358 4.7e-08 61.2 57 45.6
SalBow5G0041 Salvia bowleyana HOM05D002971 ORTHO05D003358 4.7e-08 61.2 58 48.3
TWI79G0898 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 4.7e-08 61.2 58 46.6
AL5G33500 Arabidopsis lyrata HOM05D002971 ORTHO05D003358 6.1e-08 60.8 57 45.6
Migut.J01042 Erythranthe guttata HOM05D002971 ORTHO05D003358 6.1e-08 60.8 77 40.3
CANSAT78G1472 Cannabis sativa HOM05D002971 ORTHO05D003358 7.9e-08 60.5 58 48.3
Lsat_1_v5_gn_8_77040 Lactuca sativa HOM05D002971 ORTHO05D003358 7.9e-08 60.5 58 50.0
Lalb_Chr02g0154951 Lupinus albus HOM05D002971 ORTHO05D003358 7.9e-08 60.5 59 49.2
Peaxi162Scf00290g00064 Petunia axillaris HOM05D002971 ORTHO05D003358 7.9e-08 60.5 56 55.4
Hma1.2p1_0578F.1_g182490 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 1.0e-07 60.1 53 50.9
Atru.chr8.1547 Acer truncatum HOM05D002971 ORTHO05D003358 1.4e-07 59.7 62 48.4
Ah.15g090890 Amaranthus hybridus HOM05D000064 ORTHO05D001902 1.4e-07 59.7 47 53.2
BcaB01g00345 Brassica carinata HOM05D002971 ORTHO05D003358 1.4e-07 59.7 48 52.1
Migut.L01776 Erythranthe guttata HOM05D002971 ORTHO05D003358 1.4e-07 59.7 58 48.3
Os04g0412100 Oryza sativa ssp. japonica HOM05D002971 ORTHO05D003358 1.4e-07 59.7 43 55.8
Potri.004G202900 Populus trichocarpa HOM05D002971 ORTHO05D003358 1.4e-07 59.7 58 48.3
Thhalv10010806m.g Eutrema salsugineum HOM05D002971 ORTHO05D003358 1.8e-07 59.3 58 46.6
Lsat_1_v5_gn_9_20540 Lactuca sativa HOM05D002971 ORTHO05D003358 1.8e-07 59.3 58 50.0
Nitab4.5_0009459g0030 Nicotiana tabacum HOM05D002971 ORTHO05D003358 1.8e-07 59.3 56 53.6
Lj2C136T8 Lonicera japonica HOM05D002971 ORTHO05D003358 2.3e-07 58.9 71 42.3
Lj2C136T9 Lonicera japonica HOM05D002971 ORTHO05D003358 2.3e-07 58.9 71 42.3
Nn4g23122 Nelumbo nucifera HOM05D002971 ORTHO05D003358 2.3e-07 58.9 52 51.9
Nn6g34032 Nelumbo nucifera HOM05D002971 ORTHO05D003358 2.3e-07 58.9 52 51.9
Zm00001eb421910 Zea mays HOM05D002971 ORTHO05D003358 2.3e-07 58.9 43 53.5
HanXRQChr01g0001961 Helianthus annuus HOM05D002971 ORTHO05D003358 3.0e-07 58.5 55 50.9
HanXRQChr13g0399081 Helianthus annuus HOM05D002971 ORTHO05D003358 3.0e-07 58.5 58 50.0
RcHm_v2.0_Chr5g0044531 Rosa chinensis HOM05D002971 ORTHO05D003358 3.0e-07 58.5 62 46.8
Sabra09G0128200 Salix brachista HOM05D002971 ORTHO05D003358 3.0e-07 58.5 53 47.2
CANSAT54G2951 Cannabis sativa HOM05D002971 ORTHO05D003358 3.9e-07 58.2 48 47.9
Lsat_1_v5_gn_5_164760 Lactuca sativa HOM05D002971 ORTHO05D003358 3.9e-07 58.2 58 50.0
Nn1g07074 Nelumbo nucifera HOM05D002971 ORTHO05D003358 3.9e-07 58.2 55 50.9
Zm00001eb083970 Zea mays HOM05D002971 ORTHO05D003358 3.9e-07 58.2 69 40.6
Dinv42556 Davidia involucrata HOM05D002971 ORTHO05D003358 5.1e-07 57.8 53 47.2
HanXRQChr05g0133241 Helianthus annuus HOM05D002971 ORTHO05D003358 5.1e-07 57.8 55 50.9
arahy.Tifrunner.gnm1.ann1.2VK3FY Arachis hypogaea HOM05D002971 ORTHO05D003358 6.7e-07 57.4 61 47.5
arahy.Tifrunner.gnm1.ann1.4E80DN Arachis hypogaea HOM05D002971 ORTHO05D003358 6.7e-07 57.4 61 47.5
MD00G1073200 Malus domestica HOM05D002971 ORTHO05D003358 6.7e-07 57.4 57 54.4
MSTRG.5843 Avicennia marina HOM05D002971 ORTHO05D003358 8.8e-07 57.0 55 50.9
Hma1.2p1_0084F.1_g043760 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 8.8e-07 57.0 91 37.4
Lj5g0015488 Lotus japonicus HOM05D002971 ORTHO05D003358 8.8e-07 57.0 45 53.3
Potri.004G203000 Populus trichocarpa HOM05D002971 ORTHO05D003358 8.8e-07 57.0 60 43.3
Zm00001eb242760 Zea mays HOM05D002971 ORTHO05D003358 8.8e-07 57.0 67 44.8
Eucgr.B03851 Eucalyptus grandis HOM05D002971 ORTHO05D003358 1.1e-06 56.6 63 46.0
FvH4_3g24891 Fragaria vesca HOM05D002971 ORTHO05D003358 1.1e-06 56.6 62 45.2
FAN11G0501 Fragaria x ananassa HOM05D002971 ORTHO05D003358 1.1e-06 56.6 62 45.2
HanXRQChr08g0229911 Helianthus annuus HOM05D002971 ORTHO05D003358 1.1e-06 56.6 58 44.8
Manes.08G024900 Manihot esculenta HOM05D002971 ORTHO05D003358 1.1e-06 56.6 96 36.5
Prupe.6G129600 Prunus persica HOM05D002971 ORTHO05D003358 1.5e-06 56.2 60 48.3
FAN21G3923 Fragaria x ananassa HOM05D002971 ORTHO05D003358 2.0e-06 55.8 62 45.2
Atru.chr3.3250 Acer truncatum HOM05D002971 ORTHO05D003358 2.6e-06 55.5 62 43.5
ECA248G0425 Erigeron canadensis HOM05D002971 ORTHO05D003358 2.6e-06 55.5 58 48.3
Os02g0532800 Oryza sativa ssp. japonica HOM05D002971 ORTHO05D003358 2.6e-06 55.5 66 43.9
Psat3g033520 Pisum sativum HOM05D002971 ORTHO05D003358 2.6e-06 55.5 56 42.9
SEGI_39196 Sequoiadendron giganteum HOM05D002971 ORTHO05D003358 2.6e-06 55.5 65 40.0
HanXRQChr02g0044431 Helianthus annuus HOM05D002971 ORTHO05D003358 3.3e-06 55.1 81 37.0
Sed0010508 Sechium edule HOM05D002971 ORTHO05D003358 3.3e-06 55.1 46 47.8
Peaxi162Scf00003g00510 Petunia axillaris HOM05D002971 ORTHO05D003358 4.4e-06 54.7 48 45.8
SalBow3G4581 Salvia bowleyana HOM05D002971 ORTHO05D003358 4.4e-06 54.7 44 47.7
Solyc11g068380.1 Solanum lycopersicum HOM05D002971 ORTHO05D003358 5.7e-06 54.3 48 45.8
Sopen11g027100 Solanum pennellii HOM05D002971 ORTHO05D003358 5.7e-06 54.3 48 45.8
Actinidia05434 Actinidia chinensis HOM05D002971 ORTHO05D003358 7.4e-06 53.9 44 50.0
Manes.11G161700 Manihot esculenta HOM05D002971 ORTHO05D003358 7.4e-06 53.9 58 41.4
PGSC0003DMG400026363 Solanum tuberosum HOM05D002971 ORTHO05D003358 7.4e-06 53.9 54 40.7
FAN16G2298 Fragaria x ananassa HOM05D002971 ORTHO05D003358 9.7e-06 53.5 48 50.0
Lalb_Chr20g0111741 Lupinus albus HOM05D002971 ORTHO05D003358 9.7e-06 53.5 80 35.0


User provided reference genes

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