Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.8e-89 332.4 154 100.0
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.5e-86 322.0 154 96.1
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 3.4e-51 205.3 153 58.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.4e-50 201.1 146 60.3
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.1e-49 200.3 140 60.7
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.4e-49 199.9 144 57.6
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.4e-49 199.1 142 59.2
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.1e-49 198.4 149 58.4
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.4e-49 198.0 143 58.0
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 9.2e-49 197.2 141 61.0
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 9.2e-49 197.2 149 54.4
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.6e-48 196.4 149 59.1
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.7e-48 195.7 142 59.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 4.6e-48 194.9 138 58.7
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 6.0e-48 194.5 142 57.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.8e-48 194.1 143 56.6
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 7.8e-48 194.1 143 56.6
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.3e-47 193.4 143 58.0
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.3e-47 192.6 143 55.2
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 3.0e-47 192.2 151 57.0
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.9e-47 191.8 141 56.7
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.0e-47 191.4 144 55.6
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 5.0e-47 191.4 139 59.0
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 8.6e-47 190.7 149 55.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.1e-46 190.3 150 56.0
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-46 189.9 144 54.9
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.6e-45 186.4 138 59.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.1e-45 186.0 149 54.4
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.1e-45 186.0 139 58.3
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.8e-45 185.7 147 54.4
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 8.1e-45 184.1 149 53.7
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.1e-44 183.7 139 57.6
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.4e-44 183.3 146 54.1
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.8e-44 183.0 137 57.7
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.8e-44 183.0 148 54.1
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.1e-44 182.2 148 54.7
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 5.2e-44 181.4 142 54.2
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 6.8e-44 181.0 147 52.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 8.9e-44 180.6 142 53.5
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 5.8e-43 177.9 148 52.0
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 5.8e-43 177.9 150 53.3
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 9.8e-43 177.2 151 54.3
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.7e-42 176.4 151 51.7
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.9e-42 175.6 156 55.8
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.9e-42 175.6 137 54.7
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.7e-42 175.3 149 54.4
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.9e-42 174.9 143 53.8
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 6.4e-42 174.5 140 54.3
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.9e-41 172.9 140 52.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.2e-41 172.2 133 55.6
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 7.1e-41 171.0 139 53.2
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 7.1e-41 171.0 141 51.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 9.2e-41 170.6 140 52.9
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 9.2e-41 170.6 151 50.3
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.1e-40 169.5 146 57.5
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 2.7e-40 169.1 132 56.8
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.5e-40 168.7 149 50.3
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.5e-40 168.7 135 53.3
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.5e-40 168.7 135 53.3
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.5e-40 168.7 149 49.0
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 4.6e-40 168.3 140 52.1
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.0e-39 167.2 138 53.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.3e-39 166.8 139 51.8
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.3e-39 166.8 139 51.8
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.3e-39 166.8 142 51.4
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.7e-39 166.4 135 53.3
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.7e-39 166.4 136 53.7
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.3e-39 166.0 139 51.8
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.9e-39 165.2 132 56.1
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 5.1e-39 164.9 146 47.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 6.6e-39 164.5 130 56.2
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.6e-39 164.1 133 53.4
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 8.6e-39 164.1 130 56.2
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.5e-38 163.3 131 55.0
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.9e-38 162.9 131 55.0
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.9e-38 162.9 141 51.1
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.9e-38 162.9 148 51.4
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.3e-38 161.8 131 54.2
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 5.6e-38 161.4 140 52.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 9.5e-38 160.6 130 53.8
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 9.5e-38 160.6 157 46.5
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 9.5e-38 160.6 142 48.6
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-37 160.2 129 55.0
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-37 160.2 129 55.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-37 160.2 129 55.0
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 6.2e-37 157.9 122 56.6
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 6.2e-37 157.9 144 49.3
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 8.1e-37 157.5 130 53.8
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 8.1e-37 157.5 130 53.8
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 8.1e-37 157.5 130 53.8
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.4e-36 156.8 133 51.9
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.8e-36 156.4 149 48.3
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-36 156.4 129 55.8
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-36 156.4 129 55.8
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.8e-36 156.4 149 47.7
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.1e-36 155.6 147 46.3
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 3.1e-36 155.6 142 48.6
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.8e-36 154.5 129 55.0
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.9e-36 154.1 129 55.0
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.5e-35 153.3 149 45.6
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.5e-35 153.3 138 47.8
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 3.4e-35 152.1 149 47.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.4e-33 146.7 121 52.9
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.4e-33 146.7 132 47.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.4e-33 146.0 221 36.7
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 3.2e-33 145.6 143 48.3
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-32 143.3 132 52.3
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 3.5e-32 142.1 131 46.6
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 4.6e-32 141.7 132 47.7
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 4.6e-32 141.7 130 46.9
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 4.6e-32 141.7 133 48.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.0e-31 140.6 133 47.4
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 6.6e-31 137.9 131 45.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 8.6e-31 137.5 134 47.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.9e-30 136.3 127 48.0
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.5e-30 136.0 125 48.0
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 5.6e-30 134.8 129 50.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 5.6e-30 134.8 118 54.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 4.7e-29 131.7 119 51.3
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-28 129.8 119 50.4
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.4e-28 129.4 121 47.1
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 3.4e-27 125.6 96 58.3
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 5.8e-27 124.8 145 42.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 7.6e-27 124.4 80 67.5
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.2e-26 122.9 211 32.7
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 4.9e-26 121.7 151 43.0
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 9.3e-25 117.5 96 55.2
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-24 117.1 112 46.4
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.8e-21 105.9 83 60.2
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 6.9e-20 101.3 83 53.0
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.2e-19 100.5 134 38.1
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.6e-19 99.4 106 43.4
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.7e-18 96.7 134 35.8
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 6.4e-18 94.7 162 32.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.6e-16 90.1 90 45.6
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 5.1e-15 85.1 84 41.7
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 6.6e-15 84.7 142 33.1
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.1e-14 84.0 140 31.4
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-14 82.0 72 50.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 9.6e-14 80.9 87 46.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 4.5e-11 72.0 117 33.3
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 5.5e-09 65.1 63 42.9
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 7.9e-08 61.2 57 45.6
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.0e-07 60.8 62 46.8


User provided reference genes

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