Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3151 Ceratophyllum demersum HOM05D004745 ORTHO05D005626 3.6e-61 238.0 118 100.0
TAR636G0831 Trochodendron aralioides HOM05D004745 ORTHO05D005626 1.6e-24 116.3 89 66.3
HPP92_024132 Vanilla planifolia HOM05D004745 ORTHO05D005626 1.7e-23 112.8 106 55.7
vmacro18973 Vaccinium macrocarpon HOM05D004745 ORTHO05D005626 3.0e-23 112.1 92 60.9
Hma1.2p1_0394F.1_g143470 Hydrangea macrophylla HOM05D004745 ORTHO05D005626 5.1e-23 111.3 80 67.5
Nn8g39406 Nelumbo nucifera HOM05D004745 ORTHO05D005626 6.6e-23 110.9 82 65.9
Actinidia15789 Actinidia chinensis HOM05D004745 ORTHO05D005626 1.1e-22 110.2 79 64.6
PSO170G2068 Papaver somniferum HOM05D004745 ORTHO05D005626 1.1e-22 110.2 77 71.4
PSO455G0289 Papaver somniferum HOM05D004745 ORTHO05D005626 1.1e-22 110.2 77 71.4
Thecc.06G070400 Theobroma cacao HOM05D004745 ORTHO05D005626 1.5e-22 109.8 80 68.8
Sopen07g005700 Solanum pennellii HOM05D004745 ORTHO05D005626 1.9e-22 109.4 89 60.7
COL.COLO4_12918 Corchorus olitorius HOM05D004745 ORTHO05D005626 3.3e-22 108.6 80 67.5
QL05p028225 Quercus lobata HOM05D004745 ORTHO05D005626 3.3e-22 108.6 91 59.3
FvH4_6g30190 Fragaria vesca HOM05D004745 ORTHO05D005626 4.3e-22 108.2 78 66.7
FAN14G5774 Fragaria x ananassa HOM05D004745 ORTHO05D005626 4.3e-22 108.2 78 66.7
Peaxi162Scf00320g00620 Petunia axillaris HOM05D004745 ORTHO05D005626 4.3e-22 108.2 89 61.8
RcHm_v2.0_Chr2g0136431 Rosa chinensis HOM05D004745 ORTHO05D005626 4.3e-22 108.2 94 59.6
DCAR_025491 Daucus carota HOM05D004745 ORTHO05D005626 5.6e-22 107.8 79 60.8
PGSC0003DMG400029962 Solanum tuberosum HOM05D004745 ORTHO05D005626 5.6e-22 107.8 89 58.4
CAN.G1158.5 Capsicum annuum HOM05D004745 ORTHO05D005626 7.3e-22 107.5 89 59.6
Cc04_g04150 Coffea canephora HOM05D004745 ORTHO05D005626 7.3e-22 107.5 79 63.3
FAN09G2173 Fragaria x ananassa HOM05D004745 ORTHO05D005626 7.3e-22 107.5 89 62.9
Solyc07g015860.3 Solanum lycopersicum HOM05D004745 ORTHO05D005626 7.3e-22 107.5 89 58.4
CiPaw.01G245300 Carya illinoinensis HOM05D004745 ORTHO05D005626 9.6e-22 107.1 80 65.0
FAN02G3524 Fragaria x ananassa HOM05D004745 ORTHO05D005626 9.6e-22 107.1 78 66.7
Lj9A502G38 Lonicera japonica HOM05D004745 ORTHO05D005626 9.6e-22 107.1 83 63.9
MBI04_g07638_MAGBIO Magnolia biondii HOM05D004745 ORTHO05D005626 9.6e-22 107.1 75 66.7
Nitab4.5_0009683g0020 Nicotiana tabacum HOM05D004745 ORTHO05D005626 9.6e-22 107.1 89 60.7
TWI12G1169 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 9.6e-22 107.1 80 65.0
SalBow2G2198 Salvia bowleyana HOM05D004745 ORTHO05D005626 1.3e-21 106.7 79 64.6
Hund06573 Selenicereus undatus HOM05D004745 ORTHO05D005626 1.3e-21 106.7 76 64.5
Dinv30579 Davidia involucrata HOM05D004745 ORTHO05D005626 1.6e-21 106.3 75 68.0
Nitab4.5_0000413g0130 Nicotiana tabacum HOM05D004745 ORTHO05D005626 1.6e-21 106.3 89 60.7
ATR1156G012 Amborella trichopoda HOM05D004745 ORTHO05D005626 2.1e-21 105.9 79 64.6
CSS0020299 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 2.1e-21 105.9 80 67.5
HanXRQChr10g0303121 Helianthus annuus HOM05D004745 ORTHO05D005626 2.1e-21 105.9 79 65.8
Potri.001G171800 Populus trichocarpa HOM05D004745 ORTHO05D005626 2.8e-21 105.5 79 65.8
CSS0024051 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 3.6e-21 105.1 80 68.8
Duzib235G0601 Durio zibethinus HOM05D004745 ORTHO05D005626 3.6e-21 105.1 80 65.0
Oeu000434.1 Olea europaea HOM05D004745 ORTHO05D005626 3.6e-21 105.1 79 62.0
CANSAT56G2452 Cannabis sativa HOM05D004745 ORTHO05D005626 6.2e-21 104.4 80 62.5
Peaxi162Scf00320g00617 Petunia axillaris HOM05D004745 ORTHO05D005626 6.2e-21 104.4 80 62.5
MSTRG.22729 Avicennia marina HOM05D004745 ORTHO05D005626 8.1e-21 104.0 76 61.8
CsaV3_4G001440 Cucumis sativus L. HOM05D004745 ORTHO05D005626 8.1e-21 104.0 80 65.0
ECA238G2546 Erigeron canadensis HOM05D004745 ORTHO05D005626 8.1e-21 104.0 81 61.7
Rhsim08G0215400 Rhododendron simsii HOM05D004745 ORTHO05D005626 8.1e-21 104.0 76 63.2
ClCG07G012760 Citrullus lanatus HOM05D004745 ORTHO05D005626 1.4e-20 103.2 80 65.0
Haze_16523 Corylus avellana HOM05D004745 ORTHO05D005626 1.4e-20 103.2 80 61.2
Prupe.3G081800 Prunus persica HOM05D004745 ORTHO05D005626 1.4e-20 103.2 90 60.0
SGA_v2.0_scaffold5G02669 Striga asiatica HOM05D004745 ORTHO05D005626 1.4e-20 103.2 76 61.8
AUR62016368 Chenopodium quinoa HOM05D004745 ORTHO05D005626 1.8e-20 102.8 77 67.5
Sc06g0004020 Simmondsia chinensis HOM05D004745 ORTHO05D005626 1.8e-20 102.8 78 61.5
Lsat_1_v5_gn_5_132160 Lactuca sativa HOM05D004745 ORTHO05D005626 2.4e-20 102.4 79 63.3
Sed0026286 Sechium edule HOM05D004745 ORTHO05D005626 2.4e-20 102.4 86 59.3
Atru.chr1.3054 Acer truncatum HOM05D004745 ORTHO05D005626 4.0e-20 101.7 87 63.2
Ciclev10026288m.g Citrus clementina HOM05D004745 ORTHO05D005626 4.0e-20 101.7 77 66.2
AL1G27500 Arabidopsis lyrata HOM05D004745 ORTHO05D005626 5.3e-20 101.3 99 59.6
Cfa001995 Carpinus fangiana HOM05D004745 ORTHO05D005626 5.3e-20 101.3 80 61.2
Sabra01G0139800 Salix brachista HOM05D004745 ORTHO05D005626 5.3e-20 101.3 80 61.2
AUR62011549 Chenopodium quinoa HOM05D004745 ORTHO05D005626 6.9e-20 100.9 79 64.6
Glyma.08G210900 Glycine max HOM05D004745 ORTHO05D005626 9.0e-20 100.5 80 60.0
Gohir.A10G075700 Gossypium hirsutum HOM05D004745 ORTHO05D005626 9.0e-20 100.5 77 64.9
Gohir.D10G075900 Gossypium hirsutum HOM05D004745 ORTHO05D005626 9.0e-20 100.5 77 64.9
Migut.I00794 Erythranthe guttata HOM05D004745 ORTHO05D005626 1.2e-19 100.1 78 60.3
Thhalv10008467m.g Eutrema salsugineum HOM05D004745 ORTHO05D005626 1.2e-19 100.1 96 55.2
Gorai.011G081700 Gossypium raimondii HOM05D004745 ORTHO05D005626 1.2e-19 100.1 77 64.9
AT1G15390 Arabidopsis thaliana HOM05D004745 ORTHO05D005626 1.5e-19 99.8 98 60.2
Aa31LG7G150 Aethionema arabicum HOM05D004745 ORTHO05D005626 2.6e-19 99.0 90 56.7
Lj9C59T9 Lonicera japonica HOM05D004745 ORTHO05D005626 2.6e-19 99.0 69 69.6
Phvul.010G154200 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 2.6e-19 99.0 80 60.0
EL10Ac9g21930 Beta vulgaris HOM05D004745 ORTHO05D005626 3.4e-19 98.6 79 64.6
arahy.Tifrunner.gnm1.ann1.EYL5YU Arachis hypogaea HOM05D004745 ORTHO05D005626 4.5e-19 98.2 80 63.8
arahy.Tifrunner.gnm1.ann1.Q3QYYY Arachis hypogaea HOM05D004745 ORTHO05D005626 4.5e-19 98.2 80 63.8
Carub.0001s1517 Capsella rubella HOM05D004745 ORTHO05D005626 4.5e-19 98.2 80 63.8
CARHR015930 Cardamine hirsuta HOM05D004745 ORTHO05D005626 4.5e-19 98.2 98 54.1
ECA234G1027 Erigeron canadensis HOM05D004745 ORTHO05D005626 4.5e-19 98.2 90 58.9
ECA238G4104 Erigeron canadensis HOM05D004745 ORTHO05D005626 5.8e-19 97.8 76 61.8
THA.LOC104808227 Tarenaya hassleriana HOM05D004745 ORTHO05D005626 5.8e-19 97.8 76 63.2
VMungo0331G1340 Vigna mungo HOM05D004745 ORTHO05D005626 5.8e-19 97.8 80 60.0
Ca_29515_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 7.6e-19 97.4 79 60.8
GSVIVG01017280001 Vitis vinifera HOM05D004745 ORTHO05D005626 7.6e-19 97.4 75 61.3
C08p44990 Brassica napus HOM05D004745 ORTHO05D005626 9.9e-19 97.1 78 62.8
BolC5t30092H Brassica oleracea HOM05D004745 ORTHO05D005626 9.9e-19 97.1 99 54.5
MD13G1165900 Malus domestica HOM05D004745 ORTHO05D005626 9.9e-19 97.1 88 58.0
Aqoxy7G02119 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 1.3e-18 96.7 95 54.7
ECA234G2450 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.3e-18 96.7 71 66.2
ECA238G0294 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.3e-18 96.7 71 66.2
Lalb_Chr01g0012481 Lupinus albus HOM05D004745 ORTHO05D005626 1.7e-18 96.3 84 56.0
BraA06t24321Z Brassica rapa HOM05D004745 ORTHO05D005626 2.2e-18 95.9 84 59.5
ECA233G1751 Erigeron canadensis HOM05D004745 ORTHO05D005626 2.2e-18 95.9 76 60.5
Lj3g0018837 Lotus japonicus HOM05D004745 ORTHO05D005626 2.2e-18 95.9 76 61.8
MD17G1207300 Malus domestica HOM05D004745 ORTHO05D005626 2.2e-18 95.9 87 57.5
A09p61430 Brassica napus HOM05D004745 ORTHO05D005626 2.9e-18 95.5 78 61.5
BraA09t41514Z Brassica rapa HOM05D004745 ORTHO05D005626 2.9e-18 95.5 78 61.5
Lj3g0003662 Lotus japonicus HOM05D004745 ORTHO05D005626 2.9e-18 95.5 74 63.5
Manes.11G053800 Manihot esculenta HOM05D004745 ORTHO05D005626 3.8e-18 95.1 92 54.3
unitig_747.g21294 Utricularia gibba HOM05D004745 ORTHO05D005626 3.8e-18 95.1 76 59.2
BcaC05g25480 Brassica carinata HOM05D004745 ORTHO05D005626 4.9e-18 94.7 83 59.0
ECA232G3489 Erigeron canadensis HOM05D004745 ORTHO05D005626 4.9e-18 94.7 76 59.2
BcaB03g14542 Brassica carinata HOM05D004745 ORTHO05D005626 6.4e-18 94.4 79 60.8
HanXRQChr16g0500481 Helianthus annuus HOM05D004745 ORTHO05D005626 6.4e-18 94.4 73 60.3
PGR102G0579 Punica granatum HOM05D004745 ORTHO05D005626 6.4e-18 94.4 82 58.5
BcaC07g41503 Brassica carinata HOM05D004745 ORTHO05D005626 1.1e-17 93.6 78 61.5
A06p11430 Brassica napus HOM05D004745 ORTHO05D005626 1.1e-17 93.6 83 57.8
ECA246G2906 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.1e-17 93.6 71 64.8
Sp1g13740 Schrenkiella parvula HOM05D004745 ORTHO05D005626 1.1e-17 93.6 78 61.5
C05p13550 Brassica napus HOM05D004745 ORTHO05D005626 1.4e-17 93.2 84 57.1
TPR.G38663 Trifolium pratense HOM05D004745 ORTHO05D005626 1.4e-17 93.2 78 56.4
BcaC05g25486 Brassica carinata HOM05D004745 ORTHO05D005626 1.9e-17 92.8 84 56.0
Ca_01071_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 1.9e-17 92.8 71 64.8
Psat7g255920 Pisum sativum HOM05D004745 ORTHO05D005626 2.4e-17 92.4 80 57.5
arahy.Tifrunner.gnm1.ann1.1TA14L Arachis hypogaea HOM05D004745 ORTHO05D005626 3.2e-17 92.0 80 57.5
arahy.Tifrunner.gnm1.ann1.8B3Q96 Arachis hypogaea HOM05D004745 ORTHO05D005626 3.2e-17 92.0 80 57.5
Lj9A53G21 Lonicera japonica HOM05D004745 ORTHO05D005626 3.2e-17 92.0 63 68.3
Eucgr.F02539 Eucalyptus grandis HOM05D004745 ORTHO05D005626 5.4e-17 91.3 82 56.1
Lsat_1_v5_gn_4_105820 Lactuca sativa HOM05D004745 ORTHO05D005626 5.4e-17 91.3 77 57.1
BolC8t52045H Brassica oleracea HOM05D004745 ORTHO05D005626 7.1e-17 90.9 78 59.0
Psat5g301200 Pisum sativum HOM05D004745 ORTHO05D005626 1.2e-16 90.1 70 64.3
Ca_20430_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 1.6e-16 89.7 62 69.4
Lalb_Chr14g0373711 Lupinus albus HOM05D004745 ORTHO05D005626 4.6e-16 88.2 61 70.5
MD17G1207400 Malus domestica HOM05D004745 ORTHO05D005626 4.6e-16 88.2 58 70.7
MELO3C017896.2 Cucumis melo HOM05D004745 ORTHO05D005626 6.0e-16 87.8 59 71.2
ECA240G0712 Erigeron canadensis HOM05D004745 ORTHO05D005626 6.0e-16 87.8 59 71.2
MD13G1166000 Malus domestica HOM05D004745 ORTHO05D005626 1.3e-15 86.7 58 69.0
Medtr2g103430 Medicago truncatula HOM05D004745 ORTHO05D005626 1.8e-15 86.3 62 67.7
CBR_g8594 Chara braunii HOM05D004745 ORTHO05D005626 3.0e-15 85.5 86 53.5
VMungo1080G0321 Vigna mungo HOM05D004745 ORTHO05D005626 6.7e-15 84.3 75 57.3
Medtr4g011040 Medicago truncatula HOM05D004745 ORTHO05D005626 8.7e-15 84.0 67 61.2
TPR.G37193 Trifolium pratense HOM05D004745 ORTHO05D005626 1.1e-14 83.6 62 66.1
Medtr2g103420 Medicago truncatula HOM05D004745 ORTHO05D005626 1.9e-14 82.8 65 60.0
Pp3c2_27110 Physcomitrium patens HOM05D004745 ORTHO05D005626 3.3e-14 82.0 79 53.2
Phvul.005G175900 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 4.3e-14 81.6 62 62.9
Os01g0555800 Oryza sativa ssp. japonica HOM05D004745 ORTHO05D005626 1.3e-13 80.1 61 65.6
Pp3c1_9250 Physcomitrium patens HOM05D004745 ORTHO05D005626 2.8e-13 79.0 65 53.8
Zm00001eb329240 Zea mays HOM05D004745 ORTHO05D005626 1.8e-12 76.3 61 62.3
Glyma.15G009700 Glycine max HOM05D004745 ORTHO05D005626 4.0e-12 75.1 70 54.3
Mapoly0061s0037 Marchantia polymorpha HOM05D004745 ORTHO05D005626 4.0e-12 75.1 69 49.3
Mapoly0285s0003 Marchantia polymorpha HOM05D004745 ORTHO05D005626 4.0e-12 75.1 69 49.3
Aqoxy7G02118 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 5.3e-12 74.7 71 57.7
arahy.Tifrunner.gnm1.ann1.9IE0L2 Arachis hypogaea HOM05D004745 ORTHO05D005626 1.2e-11 73.6 57 61.4
arahy.Tifrunner.gnm1.ann1.W67IMC Arachis hypogaea HOM05D004745 ORTHO05D005626 1.2e-11 73.6 57 61.4
SMO229G0001 Selaginella moellendorffii HOM05D004745 ORTHO05D005626 1.7e-10 69.7 70 55.7
TWI18G0786 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 1.7e-10 69.7 50 66.0
BcaC01g05769 Brassica carinata HOM05D004745 ORTHO05D005626 3.5e-08 62.0 63 58.7
MCO13G487 Micromonas commoda HOM05D004745 ORTHO05D005626 2.5e-06 55.8 56 51.8


User provided reference genes

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