Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.0e-131 471.9 236 100.0
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.9e-86 322.4 169 92.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 3.1e-64 249.2 170 74.1
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.7e-62 243.4 170 72.4
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.8e-62 242.3 171 66.7
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.2e-61 238.0 181 61.3
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.7e-60 236.1 180 62.8
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.7e-60 236.1 174 64.4
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 8.0e-60 234.6 172 64.5
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 8.0e-60 234.6 167 66.5
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.0e-59 234.2 187 63.6
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.0e-59 234.2 169 65.7
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.0e-59 234.2 169 64.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.4e-59 233.8 169 66.9
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.3e-59 233.0 167 65.3
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.3e-59 233.0 169 65.7
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 3.0e-59 232.6 169 65.1
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.0e-59 232.6 167 63.5
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.0e-59 232.6 169 67.5
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 4.0e-59 232.3 169 64.5
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 4.0e-59 232.3 167 64.1
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.0e-59 232.3 167 64.7
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.1e-58 230.7 170 63.5
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.5e-58 230.3 169 65.1
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 1.5e-58 230.3 169 64.5
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 2.0e-58 229.9 184 60.9
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.0e-58 229.9 174 62.6
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.6e-58 229.6 169 63.9
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.6e-58 229.6 166 65.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.6e-58 229.6 170 62.9
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 3.3e-58 229.2 169 62.1
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 3.3e-58 229.2 169 65.7
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.3e-58 229.2 169 64.5
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 3.3e-58 229.2 184 60.3
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 4.4e-58 228.8 169 62.1
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 5.7e-58 228.4 169 65.1
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 5.7e-58 228.4 169 63.3
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 5.7e-58 228.4 178 59.0
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 7.5e-58 228.0 167 65.3
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 7.5e-58 228.0 169 62.1
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.5e-58 228.0 169 63.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 9.7e-58 227.6 169 63.9
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.3e-57 227.3 174 61.5
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.3e-57 227.3 169 62.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.7e-57 226.9 162 66.0
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.7e-57 226.9 169 63.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 2.8e-57 226.1 169 65.1
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.7e-57 225.7 169 62.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 4.8e-57 225.3 169 62.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 4.8e-57 225.3 169 63.9
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 6.3e-57 224.9 169 63.3
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.1e-56 224.2 192 57.3
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.1e-56 224.2 168 64.3
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.4e-56 223.8 162 66.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.8e-56 223.4 174 58.6
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.8e-56 223.4 169 62.1
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.8e-56 223.4 170 60.6
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 3.1e-56 222.6 169 63.3
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 4.1e-56 222.2 174 60.3
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.3e-56 221.9 192 55.2
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 5.3e-56 221.9 167 63.5
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.2e-55 220.7 169 62.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.6e-55 220.3 169 62.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.6e-55 219.5 174 60.3
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.6e-55 219.5 178 59.0
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.5e-55 219.2 169 63.3
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.5e-55 218.8 172 62.2
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.9e-55 218.4 174 57.5
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.9e-55 218.4 169 61.5
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 7.7e-55 218.0 167 61.1
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.0e-54 217.6 162 64.2
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.7e-54 216.9 169 60.4
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 5.0e-54 215.3 169 60.4
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 6.5e-54 214.9 174 57.5
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.5e-54 214.9 162 59.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 6.5e-54 214.9 169 62.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 8.5e-54 214.5 169 61.5
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 8.5e-54 214.5 169 61.5
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 8.5e-54 214.5 162 64.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-53 214.2 153 65.4
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.5e-53 213.8 169 59.8
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.5e-53 213.8 169 58.6
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.5e-53 213.8 169 59.8
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 2.5e-53 213.0 169 57.4
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 3.2e-53 212.6 169 59.2
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 3.2e-53 212.6 169 60.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.2e-53 212.6 169 57.4
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 3.2e-53 212.6 169 58.6
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 4.2e-53 212.2 169 59.2
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 7.2e-53 211.5 169 59.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 7.2e-53 211.5 169 59.8
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 7.2e-53 211.5 169 58.6
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 7.2e-53 211.5 169 60.4
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.2e-52 210.7 169 59.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.6e-52 210.3 154 63.0
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-52 210.3 154 64.3
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.1e-52 209.9 169 59.8
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.7e-52 209.5 157 60.5
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.7e-52 208.8 170 56.5
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.1e-52 208.4 169 58.0
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.4e-51 207.2 169 57.4
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.4e-51 207.2 157 60.5
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.4e-51 207.2 157 60.5
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.4e-51 207.2 169 59.2
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 1.8e-51 206.8 160 61.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.3e-51 206.5 170 60.0
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.0e-51 206.1 157 61.8
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 6.8e-51 204.9 169 57.4
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 6.8e-51 204.9 158 61.4
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-50 203.8 162 60.5
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 1.5e-50 203.8 157 60.5
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 2.0e-50 203.4 169 59.8
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.6e-50 203.0 157 61.8
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 4.4e-50 202.2 169 57.4
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 4.8e-49 198.7 169 56.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 3.1e-48 196.1 169 56.2
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 7.0e-48 194.9 156 59.6
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 9.1e-48 194.5 162 61.7
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 5.9e-47 191.8 158 59.5
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.3e-46 190.7 169 54.4
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 5.0e-46 188.7 154 59.1
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.0e-43 179.5 154 54.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 8.8e-43 177.9 126 72.2
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 9.8e-42 174.5 115 65.2
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.4e-40 169.9 169 47.9
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 4.1e-40 169.1 115 62.6
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 4.1e-40 169.1 167 48.5
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.1e-40 169.1 115 65.2
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 4.5e-39 165.6 115 66.1
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 5.9e-39 165.2 156 50.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.8e-32 143.7 169 43.2
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 5.4e-32 142.1 163 44.2
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.6e-31 140.6 178 43.3
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 6.6e-30 135.2 155 47.7
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 3.3e-29 132.9 84 70.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 4.0e-27 125.9 128 50.0
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.4e-24 117.5 173 41.6
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 3.0e-22 109.8 176 37.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 1.6e-20 104.0 68 64.7
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.8e-19 100.5 115 46.1
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 3.1e-19 99.8 116 45.7
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.7e-17 94.0 103 45.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.2e-17 93.6 71 60.6
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 2.1e-15 87.0 101 43.6
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 7.8e-15 85.1 156 33.3
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 6.6e-14 82.0 76 53.9
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 5.8e-10 68.9 43 60.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.0e-06 58.2 49 53.1
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.0e-06 58.2 39 61.5


User provided reference genes

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