Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.6e-252 874.4 434 100.0
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 6.7e-198 694.1 433 82.4
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.1e-118 431.0 473 56.7
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 4.6e-114 415.6 473 53.9
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 6.3e-111 405.2 466 52.4
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 8.2e-103 378.3 473 51.0
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.6e-101 373.2 462 48.7
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 5.5e-99 365.5 461 48.2
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 6.7e-97 358.6 461 49.0
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.1e-96 357.8 464 48.5
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 4.4e-96 355.9 451 47.9
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 4.4e-96 355.9 460 49.1
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 1.7e-95 354.0 458 48.7
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 3.7e-95 352.8 461 47.9
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 4.8e-95 352.4 455 47.3
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 8.2e-95 351.7 459 48.6
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 5.3e-94 349.0 451 47.0
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 7.0e-94 348.6 453 46.1
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 1.5e-93 347.4 448 49.1
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.6e-93 346.7 467 47.5
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.2e-92 343.6 455 48.4
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.5e-91 340.9 455 45.5
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 5.5e-91 339.0 467 47.3
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 5.5e-91 339.0 450 48.0
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 5.5e-91 339.0 448 46.0
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.1e-90 337.0 463 44.7
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.6e-90 336.3 447 45.9
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 4.7e-90 335.9 455 46.8
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.0e-89 334.7 454 47.4
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.0e-89 334.7 464 45.7
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.4e-89 334.3 464 48.5
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.4e-89 334.3 456 46.3
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.4e-89 334.3 466 47.2
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.9e-89 332.8 464 45.7
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 6.7e-89 332.0 460 47.0
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 8.8e-89 331.6 445 45.4
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.5e-88 330.9 445 45.4
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 2.0e-88 330.5 399 49.6
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 7.4e-88 328.6 459 45.3
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.7e-87 327.4 455 44.4
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.7e-87 327.4 444 47.1
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.2e-87 327.0 398 50.0
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 4.8e-87 325.9 469 46.3
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 8.2e-87 325.1 453 44.8
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 8.2e-87 325.1 453 44.8
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 8.2e-87 325.1 453 44.8
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.4e-86 323.6 449 46.3
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.1e-86 323.2 398 49.7
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.1e-86 323.2 416 46.9
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.1e-86 322.8 453 44.6
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.3e-86 322.4 455 44.8
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 7.0e-86 322.0 449 46.3
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.6e-85 320.9 414 45.9
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.0e-84 318.2 459 44.0
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.3e-84 317.8 442 46.4
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 5.0e-84 315.8 388 49.2
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 6.5e-84 315.5 439 44.4
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 8.5e-84 315.1 457 44.4
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.1e-83 314.7 422 46.4
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.9e-83 313.9 442 42.5
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.2e-83 313.2 442 43.0
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 8.0e-82 308.5 394 47.2
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.0e-81 306.2 426 46.0
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 6.8e-81 305.4 479 42.8
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.2e-80 304.7 442 45.5
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 2.0e-80 303.9 420 47.6
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 4.4e-80 302.8 397 48.1
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 4.4e-80 302.8 379 48.8
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 5.7e-80 302.4 385 44.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 7.5e-80 302.0 443 41.5
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 9.8e-80 301.6 407 47.4
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.3e-79 301.2 464 42.2
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.7e-79 300.8 377 45.4
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 6.3e-79 298.9 468 42.1
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.4e-78 297.7 445 43.6
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 5.4e-78 295.8 393 44.0
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.6e-77 294.3 389 49.6
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 2.0e-77 293.9 439 44.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 2.7e-77 293.5 442 41.6
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.9e-76 290.0 381 43.8
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.2e-74 284.6 391 48.8
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 3.6e-74 283.1 404 43.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.8e-73 280.8 442 42.5
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.8e-73 280.8 469 42.0
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 3.4e-72 276.6 389 42.9
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 4.4e-72 276.2 391 43.7
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.7e-71 274.2 249 60.6
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 4.1e-70 269.6 445 40.9
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 2.0e-69 267.3 563 36.2
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.1e-67 261.5 378 44.4
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 3.3e-67 260.0 275 54.5
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 5.5e-67 259.2 375 44.3
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.2e-66 258.1 391 46.3
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.6e-66 256.5 428 39.5
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 8.0e-66 255.4 381 42.3
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 2.3e-65 253.8 386 41.5
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.2e-64 251.5 375 42.4
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.2e-64 251.5 402 40.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.5e-64 251.1 384 41.7
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 2.6e-64 250.4 393 42.2
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 6.3e-63 245.7 376 41.8
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 8.3e-63 245.4 303 49.5
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.1e-62 245.0 343 43.7
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.8e-62 244.2 163 71.8
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 3.2e-62 243.4 246 52.8
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 3.2e-62 243.4 303 47.2
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 2.0e-61 240.7 339 47.5
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.5e-59 234.6 346 42.2
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.5e-59 234.6 340 47.4
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.9e-59 234.2 346 42.2
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.8e-57 227.6 365 42.5
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 9.8e-56 221.9 161 64.6
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 3.5e-53 213.4 218 56.0
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 3.9e-52 209.9 249 45.4
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.1e-51 208.4 372 40.9
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.5e-51 208.0 234 47.9
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.2e-48 198.4 386 36.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.9e-43 181.0 213 46.9
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.8e-42 177.2 336 36.9
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.2e-39 167.5 343 37.9
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 9.2e-38 162.2 170 47.6
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 6.0e-37 159.5 352 36.1
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.3e-36 157.5 108 72.2
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 3.0e-36 157.1 316 39.9
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.1e-36 156.4 206 41.7
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 8.6e-36 155.6 161 45.3
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 5.6e-35 152.9 307 35.2
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.1e-30 138.7 308 35.7
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.1e-29 134.4 158 40.5
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.3e-28 131.7 326 32.2
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.6e-27 126.3 345 30.4
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 3.4e-24 117.1 106 45.3
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.2e-23 114.4 85 68.2
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.8e-15 87.0 68 64.7
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 6.7e-12 76.3 154 34.4
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.3e-11 73.9 233 32.6
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 5.8e-08 63.2 73 47.9


User provided reference genes

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