Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-124 449.5 233 100.0
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 8.6e-83 310.8 212 74.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.3e-82 308.5 217 72.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.6e-81 305.4 210 72.9
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.1e-81 304.3 217 72.8
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.4e-80 303.5 213 74.6
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.3e-80 302.8 217 71.9
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.1e-80 302.4 217 71.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.1e-80 302.4 211 73.9
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.2e-80 301.6 217 70.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 5.2e-80 301.6 217 70.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 5.2e-80 301.6 211 73.5
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 6.8e-80 301.2 222 69.8
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.2e-79 300.4 217 70.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.2e-79 300.4 217 71.9
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.2e-79 300.4 224 71.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.2e-79 300.4 213 72.8
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 1.5e-79 300.1 216 69.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.5e-79 300.1 212 73.1
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.5e-79 300.1 216 70.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.6e-79 299.3 210 71.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.6e-79 299.3 220 69.5
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 2.6e-79 299.3 219 68.5
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.6e-79 299.3 220 71.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.4e-79 298.9 216 70.4
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.4e-79 298.5 221 71.9
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 7.6e-79 297.7 220 67.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.6e-79 297.7 222 68.5
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 7.6e-79 297.7 224 69.6
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.3e-78 297.0 222 68.9
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.3e-78 297.0 217 69.6
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-78 297.0 222 68.5
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.3e-78 297.0 206 73.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.3e-78 297.0 217 69.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.3e-78 297.0 224 70.5
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.7e-78 296.6 222 68.0
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.7e-78 296.6 222 68.0
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.7e-78 296.6 223 68.2
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.2e-78 296.2 220 70.9
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.2e-78 296.2 216 70.4
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.9e-78 295.8 217 69.1
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 6.4e-78 294.7 209 71.3
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 6.4e-78 294.7 220 70.9
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 6.4e-78 294.7 221 67.4
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.4e-78 294.3 218 68.3
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 8.4e-78 294.3 206 72.3
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 8.4e-78 294.3 213 70.0
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.1e-77 293.9 219 69.9
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-77 293.9 221 67.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.4e-77 293.5 224 66.5
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.9e-77 293.1 222 67.6
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.9e-77 293.1 213 70.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.9e-77 293.1 215 67.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-77 292.7 221 67.4
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.4e-77 292.7 227 67.8
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 3.2e-77 292.4 231 65.8
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.1e-77 292.0 223 69.1
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 4.1e-77 292.0 221 67.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 5.4e-77 291.6 220 68.6
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 5.4e-77 291.6 222 68.0
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 9.2e-77 290.8 215 68.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 9.2e-77 290.8 223 68.2
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.2e-76 290.4 221 67.4
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.1e-76 289.7 214 70.1
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.1e-76 289.7 230 65.7
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-76 289.3 205 70.2
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 3.5e-76 288.9 217 67.7
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.5e-76 288.9 222 68.0
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.6e-76 288.5 223 69.1
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 4.6e-76 288.5 220 69.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 6.0e-76 288.1 215 66.5
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 6.0e-76 288.1 213 68.5
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 6.0e-76 288.1 222 64.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 6.0e-76 288.1 217 69.1
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 7.8e-76 287.7 214 68.7
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 7.8e-76 287.7 227 65.6
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.0e-75 287.3 215 68.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-75 287.3 215 68.4
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.3e-75 287.0 233 65.2
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.7e-75 286.6 213 69.0
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.3e-75 286.2 223 68.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 3.0e-75 285.8 217 67.3
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 3.9e-75 285.4 224 67.0
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 6.6e-75 284.6 222 66.7
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 6.6e-75 284.6 215 67.4
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 6.6e-75 284.6 213 68.1
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 6.6e-75 284.6 221 67.0
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 8.6e-75 284.3 222 65.8
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 8.6e-75 284.3 222 64.9
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-74 283.9 222 65.3
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-74 283.9 206 70.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-74 283.9 206 70.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.1e-74 283.9 216 69.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.9e-74 283.1 227 65.6
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.5e-74 282.7 217 65.9
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 3.3e-74 282.3 223 65.5
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.3e-74 282.3 217 68.2
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.3e-74 282.0 217 67.7
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 9.6e-74 280.8 217 66.4
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.2e-73 280.4 222 64.4
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.1e-73 279.6 222 65.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.8e-73 279.3 249 61.0
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 8.1e-73 277.7 226 63.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.4e-72 276.9 226 60.6
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.4e-72 276.2 217 66.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.4e-72 276.2 220 65.5
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.1e-72 275.8 241 62.7
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.2e-71 273.9 218 64.2
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.5e-71 273.5 204 67.6
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 3.4e-71 272.3 234 62.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 9.9e-71 270.8 278 55.0
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.3e-70 270.4 222 62.6
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.0e-67 259.2 217 64.1
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.3e-66 255.4 220 60.9
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 5.6e-66 255.0 220 60.9
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.3e-65 253.8 210 61.4
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.8e-65 251.9 215 60.5
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 8.1e-65 251.1 171 74.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.8e-64 250.0 310 48.1
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 9.9e-63 244.2 171 71.3
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.4e-62 241.5 165 73.3
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.4e-61 239.6 213 61.5
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 4.2e-61 238.8 222 59.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.3e-59 233.0 230 58.7
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.9e-58 229.9 221 59.3
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 9.6e-58 227.6 216 59.3
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.3e-57 227.3 224 54.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.8e-57 226.1 225 52.0
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 4.5e-55 218.8 217 54.4
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 2.9e-54 216.1 177 58.2
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 8.4e-54 214.5 208 56.7
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 7.1e-53 211.5 215 53.5
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 3.5e-52 209.1 146 72.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 7.9e-52 208.0 125 80.8
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.1e-51 205.3 249 46.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 6.7e-51 204.9 166 62.0
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 6.7e-51 204.9 124 80.6
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 4.8e-49 198.7 164 64.0
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.2e-49 198.0 159 65.4
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.1e-48 197.6 117 79.5
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 9.0e-48 194.5 158 65.2
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.4e-47 192.6 125 73.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.5e-46 188.3 220 49.1
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.1e-40 169.1 104 76.9
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.5e-39 165.6 160 61.9
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.4e-37 160.6 188 53.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.2e-37 159.5 214 43.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.3e-35 154.1 188 45.2
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 6.7e-35 151.8 297 37.4
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.9e-34 150.2 194 50.0
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 6.9e-32 141.7 180 47.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-27 126.7 118 59.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.7e-25 119.4 79 69.6
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 1.5e-23 114.0 75 72.0
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 7.2e-21 105.1 70 65.7
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.7e-20 103.2 169 39.6
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 6.1e-20 102.1 81 65.4
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.3e-19 100.1 85 60.0
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.3e-19 100.1 59 83.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.0e-19 99.8 67 73.1
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 8.8e-19 98.2 110 50.9
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.0e-18 97.1 210 35.2
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 5.7e-18 95.5 83 60.2
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 6.3e-17 92.0 83 57.8
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 6.3e-17 92.0 106 49.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 3.5e-15 86.3 159 37.7
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 5.0e-14 82.4 176 33.5
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.9e-13 80.5 99 52.5
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.3e-09 67.8 86 50.0
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 3.7e-09 66.2 55 58.2
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.8e-08 63.9 52 61.5
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 3.1e-08 63.2 46 58.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 6.5e-06 55.5 41 56.1


User provided reference genes

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