Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.4e-209 731.5 386 100.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.2e-75 287.0 239 62.8
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 2.2e-75 287.0 239 63.2
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.1e-74 284.6 238 63.9
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.2e-74 282.7 239 61.9
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.2e-74 282.7 239 61.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.2e-74 282.7 239 61.9
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.4e-74 282.3 239 62.8
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 7.1e-74 282.0 236 61.9
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.6e-73 280.8 239 61.1
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-73 280.8 239 61.5
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.5e-73 279.6 238 61.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.6e-73 279.3 238 62.6
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.0e-73 278.9 239 61.5
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 6.0e-73 278.9 239 61.1
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.3e-72 277.7 238 61.3
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-72 277.3 239 61.5
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.8e-72 277.3 281 54.4
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.0e-72 276.6 236 62.7
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 5.1e-72 275.8 236 61.9
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 6.7e-72 275.4 229 60.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 6.7e-72 275.4 238 60.5
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 8.7e-72 275.0 239 61.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 8.7e-72 275.0 236 61.9
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.1e-71 274.6 236 62.3
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.5e-71 274.2 241 60.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.5e-71 274.2 234 62.0
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.9e-71 273.9 239 60.7
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.5e-71 273.5 239 60.7
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 3.3e-71 273.1 240 60.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 5.6e-71 272.3 239 61.9
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.6e-70 270.8 235 60.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.8e-70 270.0 250 58.4
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 2.8e-70 270.0 239 59.8
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 6.2e-70 268.9 235 61.3
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 6.2e-70 268.9 226 60.2
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.1e-69 268.1 239 60.3
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.8e-69 267.3 239 61.1
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.8e-69 267.3 239 58.2
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-69 266.9 239 58.2
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.4e-69 266.9 227 62.6
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.1e-69 266.5 233 58.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.1e-69 266.5 261 56.7
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.9e-69 265.4 229 61.1
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 6.9e-69 265.4 239 57.7
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.9e-69 265.4 239 57.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 9.0e-69 265.0 234 59.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.2e-68 264.6 240 60.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.2e-68 264.6 240 61.2
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.5e-68 262.7 234 59.4
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.8e-68 262.3 239 56.9
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.8e-68 262.3 239 57.3
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.7e-67 260.8 237 56.5
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.7e-67 260.8 238 60.1
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.2e-67 260.4 224 59.8
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.2e-67 260.4 246 58.1
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 2.2e-67 260.4 245 59.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 2.2e-67 260.4 245 59.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.2e-67 260.4 235 60.4
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.2e-67 260.4 237 60.3
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 4.9e-67 259.2 237 59.9
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.9e-67 259.2 237 59.9
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.4e-67 258.8 242 60.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 6.4e-67 258.8 220 60.5
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.4e-66 257.7 236 58.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.4e-66 256.9 241 56.4
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 3.2e-66 256.5 227 60.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 3.2e-66 256.5 239 57.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.2e-66 256.1 237 57.4
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 4.2e-66 256.1 239 59.0
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 5.5e-66 255.8 243 56.8
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.6e-65 254.2 241 58.5
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.6e-65 254.2 221 60.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.1e-65 253.8 236 58.5
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 4.6e-65 252.7 243 56.4
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.3e-64 251.1 242 56.2
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.0e-64 250.0 232 58.2
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.9e-64 249.6 238 56.3
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.1e-64 249.2 259 53.7
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 8.7e-64 248.4 243 55.6
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.1e-63 248.1 242 55.0
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-63 248.1 236 55.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.5e-63 246.9 242 55.8
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.5e-63 246.9 235 56.6
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.3e-63 246.5 240 56.7
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.3e-62 244.6 228 58.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 8.2e-62 241.9 245 56.3
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.4e-61 241.1 243 55.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.8e-61 240.7 241 54.8
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 2.4e-61 240.4 223 58.3
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.0e-61 239.6 233 56.7
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 4.0e-61 239.6 235 55.3
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.4e-60 236.5 239 54.0
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 4.5e-60 236.1 232 55.2
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 5.8e-60 235.7 211 58.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.8e-60 235.7 239 54.8
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 5.8e-60 235.7 291 49.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.0e-59 235.0 235 55.3
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.7e-59 234.2 221 57.0
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.2e-59 233.8 226 55.3
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 3.8e-59 233.0 221 57.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 8.4e-59 231.9 226 53.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.2e-58 229.9 239 54.8
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.2e-57 228.0 221 54.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 4.6e-57 226.1 231 52.8
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.3e-56 224.6 208 58.2
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-55 220.7 238 52.9
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.9e-55 220.7 238 52.1
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 5.7e-55 219.2 262 49.2
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.3e-54 218.0 249 51.0
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.2e-54 217.2 269 49.1
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.8e-54 216.9 268 51.5
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 2.8e-54 216.9 195 57.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 8.2e-54 215.3 244 52.0
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.1e-53 214.9 244 51.2
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 3.1e-53 213.4 249 51.0
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 5.3e-53 212.6 227 54.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 5.3e-53 212.6 237 49.4
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.2e-52 211.5 234 50.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.2e-51 207.2 254 49.2
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 8.5e-51 205.3 252 48.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 5.5e-50 202.6 197 53.3
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.8e-48 197.6 195 55.4
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.8e-48 197.6 219 53.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.2e-46 190.7 241 45.2
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.5e-44 183.0 180 55.0
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.7e-43 181.0 200 53.5
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.8e-43 179.9 184 56.0
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.1e-42 178.3 249 45.4
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.4e-42 177.9 187 54.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.9e-40 169.9 183 54.6
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.6e-28 131.3 191 47.6
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 2.6e-28 130.6 137 55.5
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.9e-28 129.4 235 36.2
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.9e-27 127.1 235 37.9
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 3.2e-26 123.6 216 39.8
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.2e-26 123.2 213 36.6
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.2e-25 121.7 153 43.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.2e-25 121.7 216 37.0
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.7e-25 120.6 230 34.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 5.2e-24 116.3 217 37.3
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 6.7e-24 115.9 210 39.0
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-23 115.2 200 39.5
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.2e-23 115.2 231 36.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.0e-23 114.4 220 37.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.5e-23 112.5 208 38.0
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.3e-22 111.7 225 36.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-22 110.9 228 36.4
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.3e-22 109.4 221 33.5
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.3e-21 106.3 220 37.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 7.0e-21 105.9 228 32.0
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.7e-20 104.0 237 31.2
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.0e-19 102.1 205 34.1
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.8e-19 100.1 202 36.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.5e-18 98.2 235 31.5
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.6e-17 94.7 51 80.4
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.1e-17 94.4 231 32.5
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 8.0e-17 92.4 223 32.7
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.0e-15 87.8 171 39.2
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 9.8e-15 85.5 189 36.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-13 80.9 48 70.8
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 4.1e-13 80.1 172 37.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.3e-11 74.3 152 34.2
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.9e-11 73.9 54 57.4
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 8.6e-11 72.4 171 33.3
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.1e-10 72.0 153 33.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.6e-09 68.2 164 35.4
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 2.3e-08 64.3 41 63.4
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 3.0e-08 63.9 260 25.0
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.0e-08 63.5 39 64.1
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 5.2e-08 63.2 81 38.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.2e-07 62.0 65 46.2
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.4e-07 60.1 97 35.1
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 5.7e-07 59.7 30 73.3


User provided reference genes

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