Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.4e-102 375.6 195 100.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.3e-55 220.3 194 64.9
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.2e-54 214.2 203 59.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.0e-53 211.5 198 59.6
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.3e-52 210.3 196 60.2
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 6.6e-52 208.0 199 58.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.1e-51 207.2 193 61.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.3e-51 205.7 194 58.2
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 5.6e-51 204.9 190 55.8
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 5.6e-51 204.9 193 56.5
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 5.6e-51 204.9 204 54.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 7.3e-51 204.5 181 58.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.3e-51 204.5 213 59.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.2e-50 203.8 188 55.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.6e-50 203.4 178 56.7
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.1e-50 203.0 202 59.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.1e-50 203.0 193 59.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 2.8e-50 202.6 196 61.2
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.6e-50 202.2 190 55.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.6e-50 202.2 190 60.0
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 4.7e-50 201.8 187 56.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 6.2e-50 201.4 190 56.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 8.1e-50 201.1 184 56.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.1e-49 200.7 206 58.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.1e-49 200.7 198 59.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.1e-49 200.7 195 59.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.4e-49 200.3 194 55.7
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-49 200.3 198 57.6
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.8e-49 199.9 190 58.9
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.8e-49 199.9 190 58.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.3e-49 199.5 202 57.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.3e-49 199.5 195 58.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.3e-49 199.5 195 58.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 3.1e-49 199.1 190 53.7
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.1e-49 199.1 195 56.9
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 4.0e-49 198.7 200 54.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.2e-49 198.4 195 58.5
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 6.8e-49 198.0 185 59.5
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 8.9e-49 197.6 197 55.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 8.9e-49 197.6 198 61.6
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 8.9e-49 197.6 199 62.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-48 197.2 184 56.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-48 196.8 184 57.6
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.5e-48 196.8 201 58.7
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.0e-48 196.4 186 55.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.6e-48 196.1 199 55.8
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 2.6e-48 196.1 185 57.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.6e-48 196.1 196 54.6
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.4e-48 195.7 209 52.6
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 3.4e-48 195.7 201 57.7
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 4.4e-48 195.3 213 54.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.5e-48 194.5 205 55.6
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 9.9e-48 194.1 204 60.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-47 193.7 186 55.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.3e-47 193.7 186 55.4
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.7e-47 193.4 200 56.0
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.2e-47 193.0 188 55.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.9e-47 192.6 210 51.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.9e-47 192.6 199 55.3
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.1e-46 190.7 203 56.7
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.4e-46 190.3 185 60.5
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.9e-46 189.9 187 55.6
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.4e-46 189.5 195 55.9
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.1e-46 188.7 202 55.4
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 5.4e-46 188.3 199 55.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 5.4e-46 188.3 183 59.0
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.4e-46 188.3 206 56.3
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 7.1e-46 188.0 199 53.8
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.1e-46 188.0 193 56.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 9.2e-46 187.6 192 57.8
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 9.2e-46 187.6 202 55.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-45 187.2 183 59.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-45 187.2 191 62.3
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-45 186.8 201 53.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.1e-45 186.4 206 51.9
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.5e-45 185.7 183 54.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.5e-45 185.7 197 50.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.5e-45 185.7 202 53.0
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.5e-45 185.7 188 56.4
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.5e-45 185.7 202 53.0
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.5e-45 185.7 208 51.9
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.5e-45 185.7 186 53.2
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.5e-45 185.7 197 60.4
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 6.0e-45 184.9 193 50.8
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.3e-44 183.7 197 53.8
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.3e-44 183.0 187 59.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.9e-44 182.2 204 52.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.5e-43 180.3 220 53.6
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.5e-43 180.3 196 57.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.9e-43 179.9 201 51.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.3e-43 177.9 204 52.9
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.3e-43 177.9 188 51.6
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 7.3e-43 177.9 188 51.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.3e-43 177.9 188 51.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 9.5e-43 177.6 194 52.6
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.6e-42 176.8 199 50.8
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-42 176.4 183 61.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.6e-42 175.6 202 51.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.6e-42 175.6 191 57.6
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.6e-42 175.6 212 50.0
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 8.1e-42 174.5 211 53.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.2e-41 171.8 209 47.8
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.8e-41 171.4 152 59.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.6e-40 169.5 152 64.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.4e-40 169.1 158 60.8
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.7e-39 166.8 197 50.8
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.7e-39 166.8 206 46.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 6.4e-39 164.9 200 47.5
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.4e-39 164.5 167 53.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.1e-38 164.1 145 60.0
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 9.2e-38 161.0 203 48.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.2e-37 160.6 195 49.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.0e-36 156.0 208 44.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.3e-35 152.1 200 50.5
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 7.3e-35 151.4 208 49.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 9.6e-35 151.0 189 48.1
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.2e-34 150.6 184 48.4
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.4e-33 146.4 200 42.5
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.0e-33 145.6 134 60.4
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.2e-32 144.1 168 48.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.6e-32 142.9 202 45.0
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 9.9e-32 141.0 197 41.6
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.7e-31 140.2 132 56.8
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.9e-31 139.4 186 42.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 8.4e-31 137.9 186 45.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 4.2e-30 135.6 191 44.0
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 9.3e-30 134.4 170 42.9
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 3.5e-29 132.5 179 40.8
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.3e-28 130.6 177 42.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.0e-28 129.4 131 52.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.7e-28 127.9 183 38.8
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 8.7e-28 127.9 215 40.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 4.3e-27 125.6 106 58.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 9.6e-27 124.4 175 38.3
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.8e-26 122.1 136 52.9
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-25 120.6 126 50.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 9.0e-25 117.9 137 46.7
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 5.8e-24 115.2 89 62.9
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.9e-23 112.8 127 40.9
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.2e-22 109.4 123 54.5
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.4e-22 108.6 123 54.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 7.1e-22 108.2 80 55.0
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.0e-20 104.4 186 39.8
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.9e-19 100.1 179 36.9
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 4.8e-18 95.5 85 49.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.8e-18 95.5 81 53.1
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.8e-16 88.6 139 34.5
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.6e-16 88.2 134 32.1
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.2e-14 82.8 111 52.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.5e-14 82.0 88 55.7
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 7.1e-14 81.6 84 47.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.5e-13 79.3 105 55.2
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 8.2e-10 68.2 113 38.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.0e-08 63.5 91 42.9
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 2.9e-07 59.7 78 50.0
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 2.5e-06 56.6 69 52.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 4.2e-06 55.8 152 33.6


User provided reference genes

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