Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.3e-188 662.9 339 100.0
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.4e-134 481.5 483 59.4
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 6.6e-100 368.2 510 46.5
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.3e-97 358.6 511 44.4
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 7.6e-96 354.8 511 44.6
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 2.2e-95 353.2 511 44.4
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 4.9e-95 352.1 508 44.1
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 4.9e-95 352.1 508 44.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 6.4e-95 351.7 510 44.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 8.4e-95 351.3 511 44.8
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.4e-94 350.5 510 44.9
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 1.9e-94 350.1 510 43.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.2e-94 349.4 511 44.6
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 4.2e-94 349.0 510 44.5
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 7.1e-94 348.2 511 44.2
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 1.6e-93 347.1 511 45.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 4.6e-93 345.5 510 44.9
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 1.3e-92 344.0 506 45.3
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 1.3e-92 344.0 510 44.5
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 2.3e-92 343.2 514 43.4
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 3.9e-92 342.4 508 43.1
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 3.9e-92 342.4 505 44.8
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 3.9e-92 342.4 511 45.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 5.1e-92 342.0 510 44.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.1e-92 342.0 514 44.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 5.1e-92 342.0 512 43.4
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 6.6e-92 341.7 511 44.6
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 6.6e-92 341.7 514 44.6
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 8.7e-92 341.3 511 44.0
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.1e-91 340.9 505 44.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 1.1e-91 340.9 505 44.0
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.1e-91 340.9 510 42.9
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 1.5e-91 340.5 509 43.8
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 1.5e-91 340.5 510 43.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 1.5e-91 340.5 522 42.5
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.5e-91 340.5 507 44.6
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.9e-91 340.1 513 43.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.9e-91 340.1 510 43.9
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 7.3e-91 338.2 505 43.8
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 7.3e-91 338.2 513 42.9
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 1.6e-90 337.0 499 45.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 2.1e-90 336.7 508 42.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 2.8e-90 336.3 508 42.9
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 2.8e-90 336.3 509 43.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 3.6e-90 335.9 509 44.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 4.8e-90 335.5 509 41.8
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 6.2e-90 335.1 510 43.7
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 6.2e-90 335.1 508 43.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 8.1e-90 334.7 518 43.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.1e-89 334.3 512 42.4
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 1.4e-89 334.0 509 43.4
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 3.1e-89 332.8 512 42.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 3.1e-89 332.8 518 43.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.1e-89 332.8 518 42.9
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 3.1e-89 332.8 508 43.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 4.0e-89 332.4 509 42.8
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 5.3e-89 332.0 508 43.7
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 5.3e-89 332.0 518 42.9
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 6.9e-89 331.6 474 44.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 6.9e-89 331.6 510 44.1
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 6.9e-89 331.6 498 44.4
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 9.0e-89 331.3 518 42.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 2.0e-88 330.1 511 43.1
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 2.6e-88 329.7 516 43.2
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 2.6e-88 329.7 504 44.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.6e-88 329.7 510 43.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.4e-88 329.3 509 43.4
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.4e-88 329.3 509 42.8
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 3.4e-88 329.3 506 43.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 5.8e-88 328.6 510 42.5
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 7.6e-88 328.2 505 42.8
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 7.6e-88 328.2 502 44.4
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 1.7e-87 327.0 508 43.1
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 1.7e-87 327.0 512 41.8
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 2.2e-87 326.6 503 44.3
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 2.2e-87 326.6 504 44.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 2.9e-87 326.2 512 43.8
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 3.8e-87 325.9 509 42.0
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 3.8e-87 325.9 468 45.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 3.8e-87 325.9 488 44.9
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 3.8e-87 325.9 511 42.7
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 3.8e-87 325.9 513 42.5
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 4.9e-87 325.5 506 41.5
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 4.9e-87 325.5 513 42.5
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 6.4e-87 325.1 513 42.5
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 6.4e-87 325.1 511 42.5
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 8.4e-87 324.7 510 42.0
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 8.4e-87 324.7 514 43.2
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 1.1e-86 324.3 509 42.8
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 1.1e-86 324.3 509 43.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.4e-86 323.9 532 39.8
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 3.2e-86 322.8 512 41.8
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 3.2e-86 322.8 515 43.1
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 7.1e-86 321.6 510 42.2
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 1.2e-85 320.9 509 43.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.6e-85 320.5 520 42.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.1e-85 320.1 510 42.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 2.1e-85 320.1 517 41.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 2.1e-85 320.1 511 41.9
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 2.7e-85 319.7 519 41.8
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 2.7e-85 319.7 505 42.2
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 3.5e-85 319.3 510 41.8
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 4.6e-85 318.9 482 46.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 6.0e-85 318.5 510 42.0
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.0e-84 317.8 513 42.1
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.0e-84 317.8 510 42.5
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 1.0e-84 317.8 506 40.9
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 1.8e-84 317.0 477 43.6
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 1.8e-84 317.0 533 39.6
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 5.1e-84 315.5 501 42.7
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 6.7e-84 315.1 512 41.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 1.1e-83 314.3 512 40.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 1.5e-83 313.9 513 41.3
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 1.9e-83 313.5 510 42.0
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 2.5e-83 313.2 491 42.2
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 3.3e-83 312.8 510 42.0
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 4.3e-83 312.4 510 42.5
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 4.3e-83 312.4 480 43.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 4.3e-83 312.4 510 42.0
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 5.6e-83 312.0 515 39.6
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 1.6e-82 310.5 512 39.6
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 2.6e-80 303.1 469 42.9
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 7.6e-80 301.6 486 41.8
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 2.2e-79 300.1 502 41.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 3.8e-79 299.3 508 40.0
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 6.4e-79 298.5 508 39.8
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 8.4e-79 298.1 506 40.5
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 3.2e-78 296.2 511 40.1
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 4.2e-78 295.8 505 39.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 7.1e-78 295.0 505 39.6
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 6.0e-77 292.0 511 40.5
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 4.8e-74 282.3 341 49.0
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 1.1e-73 281.2 505 38.6
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 1.1e-73 281.2 504 39.3
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 4.5e-72 275.8 478 41.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 9.0e-65 251.5 161 77.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.4e-64 249.6 397 43.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 2.2e-63 246.9 479 35.9
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 3.1e-57 226.5 187 63.6
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 7.7e-56 221.9 167 68.9
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.0e-47 192.6 110 80.9
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.6e-45 187.6 426 35.0
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 5.2e-44 182.6 202 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 2.5e-38 163.7 167 49.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.5e-38 163.7 185 49.2
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 4.8e-26 122.9 66 81.8
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 5.9e-24 115.9 201 37.8
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.0e-20 105.1 59 88.1
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.2e-19 101.7 85 62.4
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 3.3e-14 83.6 56 69.6
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 3.3e-14 83.6 56 69.6
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.6e-13 81.3 56 69.6


User provided reference genes

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