Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 0.0e+00 1285.4 641 100.0
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 9.2e-252 873.6 998 50.4
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 1.3e-250 869.8 981 51.0
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 1.9e-244 849.4 980 49.4
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 1.9e-241 839.3 983 49.8
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 1.4e-239 833.2 982 48.5
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 2.6e-238 828.9 973 48.4
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 9.9e-238 827.0 975 47.9
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 3.7e-237 825.1 971 48.5
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 4.9e-237 824.7 975 48.6
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.4e-236 823.2 971 47.9
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 1.9e-236 822.8 978 47.9
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.4e-236 822.4 971 48.3
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 3.2e-236 822.0 971 47.9
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 5.4e-236 821.2 975 49.1
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 1.6e-235 819.7 976 47.8
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.6e-235 819.7 971 47.9
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 2.1e-235 819.3 952 49.2
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 2.7e-235 818.9 977 47.5
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 2.7e-235 818.9 975 49.1
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 6.0e-235 817.8 979 48.2
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 7.8e-235 817.4 982 47.9
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 7.8e-235 817.4 981 47.9
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 5.1e-234 814.7 965 48.3
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 8.6e-234 813.9 985 47.7
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 8.6e-234 813.9 947 48.5
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 1.1e-233 813.5 948 48.4
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 3.3e-233 812.0 967 47.4
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 5.6e-233 811.2 947 48.4
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 5.6e-233 811.2 966 47.8
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 7.3e-233 810.8 948 48.7
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 1.2e-232 810.1 951 48.5
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 3.6e-232 808.5 959 48.2
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 4.7e-232 808.1 887 50.7
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 8.1e-232 807.4 966 47.5
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 8.1e-232 807.4 966 47.7
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 1.4e-231 806.6 966 47.9
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 1.8e-231 806.2 1010 46.8
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 1.2e-230 803.5 983 47.5
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 2.6e-230 802.4 973 47.8
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 3.4e-230 802.0 979 46.7
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 3.4e-230 802.0 979 46.7
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 3.4e-230 802.0 976 47.6
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 9.9e-230 800.4 975 47.6
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 1.7e-229 799.7 957 47.6
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.7e-229 799.7 957 48.0
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 2.2e-229 799.3 972 47.1
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 2.9e-229 798.9 940 48.1
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 2.9e-229 798.9 974 47.6
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 4.9e-229 798.1 957 47.9
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 1.4e-228 796.6 958 47.4
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 1.4e-228 796.6 975 46.9
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 1.9e-228 796.2 964 47.4
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 4.1e-228 795.0 960 47.4
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 7.1e-228 794.3 957 47.1
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 9.2e-228 793.9 988 46.5
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 2.1e-227 792.7 988 46.5
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 7.8e-227 790.8 957 46.9
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 5.1e-226 788.1 962 47.5
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 1.1e-225 786.9 953 47.6
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 3.3e-225 785.4 969 46.7
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 7.3e-225 784.3 977 46.3
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 1.6e-224 783.1 961 47.1
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 1.6e-224 783.1 1030 45.3
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 2.1e-224 782.7 1026 45.5
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 4.7e-224 781.6 971 47.5
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 3.1e-223 778.9 974 47.1
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 3.1e-223 778.9 961 47.1
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 4.2e-220 768.5 939 48.2
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 4.8e-216 755.0 877 48.3
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 8.1e-216 754.2 888 48.2
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 1.1e-212 743.8 908 47.4
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 9.3e-212 740.7 465 77.0
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.8e-210 736.5 920 46.0
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 1.5e-209 733.4 931 45.6
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.4e-207 726.9 936 45.3
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.5e-206 723.4 464 73.3
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 7.6e-206 721.1 441 76.4
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 1.7e-205 719.9 459 73.2
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 3.4e-198 695.7 482 70.3
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.1e-196 690.6 909 44.7
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 1.1e-196 690.6 895 43.8
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 2.7e-195 686.0 1023 40.7
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 2.7e-195 686.0 464 71.8
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 2.8e-192 676.0 938 43.9
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 1.4e-191 673.7 443 72.2
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 3.8e-189 665.6 946 41.6
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 1.5e-182 643.7 963 38.9
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 2.5e-180 636.3 385 76.4
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 3.6e-179 632.5 980 40.6
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 3.9e-178 629.0 402 73.9
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 3.6e-163 579.3 964 38.8
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.0e-149 534.6 800 41.9
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.4e-143 514.2 310 77.4
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 4.4e-137 492.7 325 70.8
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.2e-131 474.6 293 75.8
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 1.6e-118 431.0 393 57.0
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 3.9e-117 426.4 279 72.4
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.9e-112 410.2 455 49.0
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.9e-100 370.9 881 30.4
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 5.6e-100 369.4 271 64.9
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 2.1e-86 324.3 688 34.6
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 4.6e-86 323.2 694 33.0
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 2.2e-80 304.3 223 65.9
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.5e-78 297.0 661 34.6
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 3.7e-75 287.0 219 66.7
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 5.0e-56 223.4 165 73.3
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 8.5e-56 222.6 165 73.3
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 3.3e-52 210.7 143 79.7
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 9.7e-52 209.1 108 83.3
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 1.4e-50 205.3 135 80.7
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 2.2e-48 198.0 140 65.7
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.3e-32 144.8 107 65.4
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 6.8e-29 133.3 113 64.6
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.0e-24 119.4 67 82.1
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.4e-21 109.0 67 74.6
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.4e-21 109.0 67 74.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.8e-21 108.6 67 74.6
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 3.1e-21 107.8 67 74.6
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 3.1e-21 107.8 67 74.6
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 3.1e-21 107.8 67 74.6
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 4.0e-21 107.5 84 72.6
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.2e-21 107.1 67 74.6
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 4.4e-20 104.0 67 73.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 4.4e-20 104.0 81 64.2
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.8e-20 103.6 67 73.1
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 3.2e-18 97.8 78 66.7
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 2.7e-17 94.7 66 68.2
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.7e-17 94.7 75 62.7
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 2.7e-17 94.7 75 62.7
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 3.9e-16 90.9 76 60.5
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.2e-14 85.9 75 57.3
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 6.2e-14 83.6 63 69.8
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 4.4e-12 77.4 348 25.6
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 5.8e-12 77.0 348 25.6
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 5.8e-12 77.0 348 25.6
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 1.7e-11 75.5 342 23.4
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.9e-11 74.7 348 25.0
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 4.9e-11 73.9 345 25.5
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 1.4e-10 72.4 356 22.2
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 1.4e-10 72.4 361 25.8
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 1.9e-10 72.0 376 23.9
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 1.9e-10 72.0 376 23.9
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 2.4e-10 71.6 348 24.7
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 3.2e-10 71.2 376 23.7
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 3.2e-10 71.2 366 24.9
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 7.1e-10 70.1 376 23.7
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 7.1e-10 70.1 376 23.7
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 2.7e-09 68.2 346 22.5
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 5.1e-08 63.9 327 23.5
Solyc11g010550.2 Solanum lycopersicum HOM05D006593 ORTHO05D008512 8.6e-08 63.2 348 23.6
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 1.9e-07 62.0 184 26.6
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 3.3e-07 61.2 360 24.4
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 7.3e-07 60.1 56 60.7
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 2.1e-06 58.5 39 76.9
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 2.1e-06 58.5 39 76.9


User provided reference genes

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