Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.4e-186 654.8 326 100.0
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 5.0e-36 156.0 211 45.5
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 3.2e-35 153.3 187 44.4
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.2e-34 151.4 339 36.6
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.9e-33 146.4 285 34.7
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-32 144.4 282 35.8
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 4.8e-31 139.4 190 42.6
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 8.2e-31 138.7 207 40.6
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.4e-30 137.9 280 34.6
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.1e-30 136.7 187 41.2
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 4.1e-30 136.3 269 37.9
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 7.0e-30 135.6 195 41.0
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.2e-29 134.8 218 39.4
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.2e-29 134.8 218 39.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.0e-28 131.7 191 41.9
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 5.0e-28 129.4 190 44.7
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 6.5e-28 129.0 199 40.7
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 6.5e-28 129.0 199 40.7
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.5e-27 127.1 190 38.9
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 3.2e-27 126.7 190 38.9
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.2e-27 126.7 195 36.9
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.7e-26 122.9 309 32.0
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.1e-26 122.5 189 40.2
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.8e-25 120.9 190 40.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.3e-25 120.6 203 37.4
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.9e-25 119.8 274 33.2
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.9e-25 119.8 187 38.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.1e-24 118.2 203 36.5
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.5e-24 117.9 195 37.4
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 3.3e-24 116.7 284 32.0
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 9.7e-24 115.2 186 37.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.4e-22 111.3 190 37.4
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 4.1e-22 109.8 205 37.1
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.1e-22 108.6 192 38.5
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 9.1e-22 108.6 189 37.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.2e-21 108.2 189 37.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.2e-21 108.2 192 38.5
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.6e-21 107.8 204 36.3
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 3.5e-21 106.7 290 29.0
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.5e-21 106.7 190 37.4
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 3.5e-21 106.7 200 32.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.5e-21 106.3 189 37.6
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.5e-21 106.3 189 34.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 4.5e-21 106.3 260 30.4
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 7.7e-21 105.5 204 38.2
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.0e-20 105.1 211 37.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.0e-20 105.1 189 37.0
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-20 104.8 189 37.0
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-20 104.8 189 37.0
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.3e-20 104.8 275 28.4
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.2e-20 104.0 198 36.9
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.9e-20 103.6 190 35.3
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 5.0e-20 102.8 239 36.4
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 5.0e-20 102.8 206 36.9
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 6.5e-20 102.4 211 37.0
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 8.5e-20 102.1 260 30.0
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-19 100.9 209 36.8
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-19 100.9 209 36.8
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.9e-19 100.9 209 36.8
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 7.2e-19 99.0 191 38.2
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 1.2e-18 98.2 161 38.5
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-18 97.8 206 34.5
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-18 97.8 204 37.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-18 97.8 204 37.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.1e-18 97.4 164 38.4
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 2.1e-18 97.4 202 34.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-18 97.4 202 34.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-18 97.4 202 34.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-18 97.4 201 34.3
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-18 97.4 202 34.2
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.7e-18 97.1 186 34.4
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.7e-18 97.1 194 33.0
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.7e-18 97.1 207 34.3
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 3.6e-18 96.7 269 29.7
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 4.7e-18 96.3 238 34.5
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 4.7e-18 96.3 186 34.4
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 6.1e-18 95.9 267 31.5
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 8.0e-18 95.5 208 38.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 8.0e-18 95.5 195 35.9
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.0e-17 95.1 93 51.6
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.0e-17 95.1 188 36.7
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.4e-17 94.7 110 46.4
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.4e-17 94.7 184 34.2
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-17 94.4 208 34.1
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 2.3e-17 94.0 191 37.2
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.3e-17 94.0 191 33.5
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.0e-17 93.2 189 32.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 5.2e-17 92.8 189 32.8
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 6.7e-17 92.4 179 38.0
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.2e-16 91.7 206 33.5
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 2.6e-16 90.5 196 37.8
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 3.3e-16 90.1 369 27.4
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 3.3e-16 90.1 196 32.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.4e-16 89.7 198 35.9
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.4e-16 89.7 197 31.5
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 7.5e-16 89.0 187 31.0
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 9.7e-16 88.6 194 32.5
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.7e-15 87.8 271 28.4
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.2e-15 87.4 199 37.2
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 4.8e-15 86.3 202 34.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-14 84.7 172 39.0
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.8e-14 84.3 201 33.3
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.8e-14 84.3 262 29.4
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.8e-14 84.3 262 29.4
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 4.1e-14 83.2 200 31.0
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.1e-14 83.2 237 30.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 5.3e-14 82.8 170 35.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 7.0e-14 82.4 207 35.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.0e-14 82.4 190 33.7
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.0e-14 82.4 190 33.7
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 2.0e-13 80.9 195 34.9
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.7e-13 80.5 238 31.9
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 4.5e-13 79.7 139 41.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 7.7e-13 79.0 187 31.6
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.0e-12 78.6 321 28.3
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-12 77.8 244 32.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.7e-12 77.8 216 31.9
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.2e-12 77.4 216 31.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 6.5e-12 75.9 164 36.0
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.1e-11 75.1 196 32.7
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.5e-11 74.7 272 26.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.5e-11 74.7 226 27.9
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.9e-11 74.3 193 33.2
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.9e-11 74.3 272 26.8
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.2e-11 73.6 106 49.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 3.2e-11 73.6 316 27.5
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.2e-11 73.6 152 34.2
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.2e-11 73.6 152 34.2
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.2e-11 73.2 133 36.8
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 4.2e-11 73.2 276 27.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.6e-10 71.2 204 32.8
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.6e-10 71.2 205 30.7
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.6e-10 71.2 204 33.8
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.1e-10 70.9 125 36.0
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.6e-10 70.1 277 26.0
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.8e-09 67.8 93 40.9
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.0e-09 67.0 179 33.0
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.0e-08 64.3 184 33.7
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.0e-08 64.3 96 39.6
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 2.6e-08 63.9 197 32.5
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.6e-08 63.9 197 32.5
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-08 63.9 190 30.5
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 4.4e-08 63.2 131 35.1
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 3.7e-07 60.1 204 28.9
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-06 57.8 53 56.6
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.4e-06 57.4 190 27.4
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 5.4e-06 56.2 191 30.4
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 9.1e-06 55.5 53 56.6


User provided reference genes

Program Settings