Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.6e-288 994.2 492 100.0
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.4e-238 828.2 501 83.2
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.1e-175 619.0 491 63.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 4.2e-172 608.6 487 62.4
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.6e-171 606.7 482 63.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.1e-171 606.3 474 63.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 4.7e-171 605.1 487 62.0
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 6.1e-171 604.7 473 63.2
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-170 604.0 483 62.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.0e-170 602.1 487 62.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.8e-170 600.9 484 62.6
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.6e-169 599.4 479 63.0
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 9.7e-169 597.4 481 63.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.2e-168 596.3 485 62.3
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.7e-168 595.5 479 63.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.8e-168 595.1 474 62.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-167 594.0 479 63.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.4e-167 593.6 477 62.3
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.4e-167 593.6 482 61.2
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.4e-167 592.8 483 62.9
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 2.4e-167 592.8 483 61.3
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 4.1e-167 592.0 496 61.3
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 9.1e-167 590.9 481 62.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.0e-166 589.7 483 61.3
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 5.9e-166 588.2 483 63.1
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.9e-166 588.2 472 64.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.8e-165 585.5 486 62.3
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 6.5e-165 584.7 479 63.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-164 583.9 479 62.6
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.1e-164 583.9 475 62.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.5e-164 583.6 447 65.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.5e-164 583.6 474 62.9
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 7.2e-164 581.3 478 62.3
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.6e-163 580.1 477 61.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.7e-163 578.6 484 62.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.0e-162 577.4 477 61.2
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-162 577.0 481 60.7
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.8e-162 576.6 479 62.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.0e-162 575.9 480 61.5
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 5.2e-162 575.1 483 60.7
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.6e-161 572.8 478 60.0
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.6e-161 572.8 516 57.0
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 4.4e-161 572.0 475 60.2
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 7.5e-161 571.2 478 59.8
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 9.8e-161 570.9 478 61.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 9.8e-161 570.9 480 61.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.8e-161 570.9 476 62.0
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.3e-160 570.5 475 60.4
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.3e-160 568.2 476 61.8
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 8.3e-160 567.8 480 60.8
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.1e-159 567.4 475 60.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.1e-159 565.5 476 61.6
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 9.1e-159 564.3 480 60.6
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.9e-158 561.6 480 60.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.7e-157 560.1 484 58.9
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 3.8e-157 558.9 483 59.2
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.5e-156 557.0 487 60.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.3e-156 555.8 477 60.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 9.5e-156 554.3 476 59.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.2e-155 553.9 486 59.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.1e-155 553.1 486 59.7
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.8e-155 552.7 486 59.7
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.8e-155 552.7 480 58.1
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.0e-154 550.8 479 59.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.4e-154 550.4 453 61.1
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 8.9e-154 547.7 463 60.0
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-153 547.4 476 59.5
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.0e-153 546.6 451 61.4
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 4.4e-153 545.4 466 60.9
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 7.5e-153 544.7 479 58.7
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.2e-152 543.1 439 63.8
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.3e-152 541.6 478 58.8
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 8.3e-152 541.2 475 58.5
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 8.3e-152 541.2 477 59.3
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.4e-151 540.4 478 58.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.4e-151 540.4 479 60.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.8e-151 540.0 475 58.7
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.8e-151 540.0 478 58.4
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.1e-151 539.3 483 58.4
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 7.0e-151 538.1 482 57.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 3.5e-150 535.8 478 57.7
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 3.5e-150 535.8 474 58.4
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 4.5e-150 535.4 478 57.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 4.5e-150 535.4 482 57.3
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 5.9e-150 535.0 483 58.2
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.9e-149 532.3 475 58.1
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.9e-149 532.3 475 58.1
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 5.0e-149 531.9 474 58.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.1e-148 530.8 491 55.4
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 4.3e-148 528.9 554 52.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 5.6e-148 528.5 473 58.1
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.3e-148 528.1 415 63.6
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 7.3e-148 528.1 484 57.6
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 7.3e-148 528.1 479 58.2
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.8e-147 526.2 477 57.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.4e-145 519.2 479 58.7
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 3.7e-144 515.8 478 56.9
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.3e-141 506.5 440 59.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.9e-141 505.8 435 60.0
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.1e-140 504.2 483 55.5
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-139 500.7 477 56.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-139 500.4 474 57.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.1e-139 500.0 480 55.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.8e-139 499.6 509 53.4
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.2e-137 494.2 413 60.0
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.2e-137 494.2 537 51.0
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.3e-136 490.7 452 55.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-135 487.3 373 63.5
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 5.4e-135 485.3 488 53.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-129 467.6 451 55.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.9e-128 463.0 478 53.8
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 6.0e-126 455.3 478 51.7
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.2e-123 447.6 443 53.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.2e-121 441.0 475 52.4
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.9e-121 438.0 354 63.0
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-119 434.5 412 55.3
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.1e-117 425.6 371 58.8
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.6e-115 420.6 545 44.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.2e-113 414.5 466 48.1
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 7.1e-95 352.1 278 62.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.3e-93 347.1 292 58.9
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.6e-86 322.8 442 45.0
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.5e-80 302.0 337 52.8
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.2e-71 272.3 270 52.6
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.6e-70 270.0 226 61.5
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 3.0e-69 266.9 477 37.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 6.3e-67 259.2 284 51.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.5e-65 254.6 385 38.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-60 238.0 500 34.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.7e-59 233.4 427 36.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.4e-58 230.7 529 33.5
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.0e-58 229.2 293 49.1
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.2e-56 224.2 204 56.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 8.8e-53 212.2 462 34.6
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-50 205.3 189 54.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.0e-49 201.1 259 45.9
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-46 191.0 248 45.2
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-42 177.9 111 72.1
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.4e-42 177.6 111 72.1
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-40 172.2 111 69.4
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.7e-40 171.4 107 74.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 9.8e-36 155.6 137 55.5
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.7e-35 154.8 180 46.7
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.7e-33 147.5 169 46.7
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 5.9e-33 146.4 116 60.3
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.0e-32 143.3 111 62.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-30 137.9 284 32.7
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.0e-28 131.3 170 47.1
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-26 125.2 106 61.3
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 3.9e-24 117.1 189 40.2
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.9e-24 117.1 83 66.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.2e-19 101.3 64 81.2
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.2e-17 95.5 69 66.7
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.3e-15 87.4 54 68.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 2.0e-12 78.2 57 64.9
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.4e-10 72.0 42 81.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.3e-08 65.5 52 65.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 3.9e-08 63.9 73 49.3
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.9e-07 61.6 40 75.0
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.5e-07 61.2 46 67.4


User provided reference genes

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