Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 9.0e-120 433.7 237 100.0
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.5e-86 321.2 205 82.0
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 5.9e-55 218.4 194 59.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 3.3e-29 132.9 201 42.8
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.4e-27 127.5 188 41.5
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 4.4e-26 122.5 133 45.9
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 1.3e-25 120.9 166 40.4
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.2e-25 120.2 137 47.4
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 2.9e-25 119.8 196 38.3
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 6.4e-25 118.6 186 36.0
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 8.3e-25 118.2 173 39.3
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.1e-24 117.9 141 43.3
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-24 117.5 166 38.6
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 7.1e-24 115.2 160 41.9
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 7.1e-24 115.2 141 41.1
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 9.2e-24 114.8 133 43.6
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.2e-23 114.4 174 38.5
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 2.7e-23 113.2 133 43.6
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 3.5e-23 112.8 182 35.7
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 4.6e-23 112.5 133 46.6
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-22 110.9 173 38.7
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 6.6e-22 108.6 162 37.0
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 8.6e-22 108.2 162 37.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.1e-21 107.8 168 37.5
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.1e-21 107.8 137 43.1
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.5e-21 107.5 171 38.6
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.5e-21 107.5 169 36.7
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.5e-21 107.5 139 41.7
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.5e-21 106.7 139 42.4
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.5e-21 106.7 140 38.6
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 2.5e-21 106.7 133 42.1
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 3.3e-21 106.3 147 37.4
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.3e-21 105.9 146 39.7
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 4.3e-21 105.9 146 39.7
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 4.3e-21 105.9 159 37.7
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 4.3e-21 105.9 162 36.4
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.3e-21 105.1 137 40.1
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 9.6e-21 104.8 172 34.9
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 9.6e-21 104.8 146 39.7
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.2e-20 104.4 170 40.0
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.6e-20 102.8 137 41.6
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.7e-20 102.4 137 39.4
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 4.7e-20 102.4 116 46.6
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 6.2e-20 102.1 150 37.3
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 8.1e-20 101.7 174 36.2
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 8.1e-20 101.7 138 39.1
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.4e-19 100.9 181 34.8
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-19 100.5 168 38.1
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.8e-19 100.5 137 40.1
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.4e-19 100.1 178 37.6
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 3.1e-19 99.8 174 36.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.1e-19 99.8 137 38.0
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.0e-19 99.4 168 37.5
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.5e-18 97.4 165 32.7
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.0e-18 97.1 180 37.2
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 5.8e-18 95.5 182 33.5
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 5.8e-18 95.5 187 37.4
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 7.6e-18 95.1 179 38.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 7.6e-18 95.1 185 37.3
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.3e-17 94.4 173 35.8
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 1.3e-17 94.4 138 39.9
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.3e-17 94.4 179 36.3
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.7e-17 94.0 153 39.9
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.7e-17 94.0 153 39.9
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.7e-17 94.0 172 35.5
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.7e-17 94.0 151 35.1
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.9e-17 93.2 184 37.5
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.9e-17 93.2 179 36.9
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 3.8e-17 92.8 187 31.6
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 8.4e-17 91.7 164 31.1
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.9e-16 90.5 188 36.2
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.9e-16 90.5 156 35.3
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 2.4e-16 90.1 179 35.2
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 2.4e-16 90.1 142 39.4
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 3.2e-16 89.7 111 38.7
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 3.2e-16 89.7 111 38.7
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 5.4e-16 89.0 175 30.3
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.3e-16 88.2 80 50.0
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.1e-15 87.0 111 43.2
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 2.7e-15 86.7 152 34.2
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 3.5e-15 86.3 170 32.9
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 7.8e-15 85.1 81 48.1
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 1.0e-14 84.7 133 38.3
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 3.9e-14 82.8 151 33.8
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.5e-13 80.9 170 32.4
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 3.3e-13 79.7 166 28.9
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 3.3e-13 79.7 119 36.1
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 4.3e-13 79.3 164 32.9
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 7.3e-13 78.6 143 32.9
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 7.3e-13 78.6 143 32.9
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 9.6e-13 78.2 148 31.8
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.1e-12 77.0 142 33.1
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 2.8e-12 76.6 134 32.8
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 3.6e-12 76.3 141 31.9
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 3.6e-12 76.3 141 31.9
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.8e-12 75.9 143 35.7
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 4.8e-12 75.9 193 30.6
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 6.2e-12 75.5 129 34.1
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 1.1e-11 74.7 109 44.0
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 1.5e-10 70.9 159 31.4
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 1.5e-10 70.9 109 38.5
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.6e-10 70.1 171 32.2
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 4.4e-10 69.3 132 36.4
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.8e-10 68.9 171 31.6
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 5.8e-10 68.9 157 32.5
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.2e-09 67.0 129 28.7
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.8e-09 66.2 110 31.8
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 4.9e-09 65.9 168 31.0
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 6.4e-09 65.5 168 30.4
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 6.4e-09 65.5 220 25.5
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 8.4e-09 65.1 127 34.6
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 2.4e-08 63.5 157 29.9
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 4.2e-08 62.8 157 29.3
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.2e-08 62.8 98 37.8
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 5.4e-08 62.4 197 29.9
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 7.1e-08 62.0 160 28.1
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.6e-07 60.8 137 27.7
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 1.6e-07 60.8 115 28.7
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 1.6e-07 60.8 112 33.0
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 2.1e-07 60.5 93 35.5
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 2.1e-07 60.5 93 35.5
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 2.7e-07 60.1 89 38.2
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.7e-07 60.1 86 39.5
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 4.6e-07 59.3 125 27.2
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 4.6e-07 59.3 59 47.5
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.6e-07 59.3 95 31.6
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.6e-07 59.3 94 38.3
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 4.6e-07 59.3 91 37.4
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 6.0e-07 58.9 89 36.0
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 6.0e-07 58.9 142 29.6
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 6.0e-07 58.9 91 38.5
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 7.9e-07 58.5 139 28.1
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 1.0e-06 58.2 125 27.2
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 1.0e-06 58.2 91 38.5
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 1.3e-06 57.8 61 45.9
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.3e-06 57.8 138 28.3
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.3e-06 57.8 101 32.7
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.3e-06 57.8 167 25.1
Aqoxy4G00561 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.7e-06 57.4 188 26.6
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 1.7e-06 57.4 91 38.5
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 1.7e-06 57.4 92 34.8
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 3.0e-06 56.6 130 24.6
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.9e-06 56.2 161 26.7
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 3.9e-06 56.2 91 37.4
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 5.1e-06 55.8 161 26.7
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 5.1e-06 55.8 91 38.5
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 5.1e-06 55.8 152 30.3
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 6.6e-06 55.5 194 27.8
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 6.6e-06 55.5 91 37.4
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 8.7e-06 55.1 91 34.1
Ca_24568_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 8.7e-06 55.1 87 33.3
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.7e-06 55.1 100 32.0


User provided reference genes

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