Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 1.1e-113 413.3 204 100.0
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 4.2e-65 251.9 127 96.9
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 1.3e-63 246.9 127 94.5
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 2.3e-63 246.1 127 92.1
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 3.9e-63 245.4 127 93.7
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 3.9e-63 245.4 127 92.9
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 3.9e-63 245.4 127 92.9
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 5.1e-63 245.0 127 92.9
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 6.6e-63 244.6 127 92.9
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 6.6e-63 244.6 127 92.9
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 6.6e-63 244.6 127 92.9
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 8.7e-63 244.2 132 88.6
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 8.7e-63 244.2 132 88.6
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 8.7e-63 244.2 132 88.6
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 8.7e-63 244.2 127 93.7
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 8.7e-63 244.2 127 92.9
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 8.7e-63 244.2 127 92.9
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 1.1e-62 243.8 127 92.9
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 1.1e-62 243.8 127 92.9
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 1.5e-62 243.4 127 92.9
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 1.5e-62 243.4 127 91.3
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.5e-62 243.4 127 92.9
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.9e-62 243.0 127 92.1
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.9e-62 243.0 127 92.1
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 1.9e-62 243.0 127 92.1
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 2.5e-62 242.7 127 91.3
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 2.5e-62 242.7 127 92.1
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 2.5e-62 242.7 127 92.1
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 2.5e-62 242.7 127 92.1
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 2.5e-62 242.7 127 92.9
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 3.3e-62 242.3 127 92.1
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 4.3e-62 241.9 127 92.1
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 4.3e-62 241.9 127 92.1
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 4.3e-62 241.9 127 92.1
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 4.3e-62 241.9 127 92.1
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 5.6e-62 241.5 127 92.1
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 5.6e-62 241.5 127 92.1
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 5.6e-62 241.5 127 92.1
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 5.6e-62 241.5 127 92.1
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 7.4e-62 241.1 127 91.3
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 7.4e-62 241.1 133 88.0
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 9.6e-62 240.7 127 91.3
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 9.6e-62 240.7 127 91.3
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 9.6e-62 240.7 127 91.3
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 1.3e-61 240.4 127 91.3
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 1.3e-61 240.4 127 92.1
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 1.3e-61 240.4 127 90.6
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 1.3e-61 240.4 127 91.3
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 1.3e-61 240.4 127 91.3
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 1.6e-61 240.0 127 91.3
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.6e-61 240.0 127 90.6
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.6e-61 240.0 127 90.6
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 2.1e-61 239.6 127 90.6
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 2.8e-61 239.2 127 89.8
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 2.8e-61 239.2 127 91.3
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 2.8e-61 239.2 127 91.3
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 2.8e-61 239.2 127 91.3
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 3.6e-61 238.8 127 90.6
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 3.6e-61 238.8 127 90.6
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 3.6e-61 238.8 127 91.3
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 4.8e-61 238.4 127 89.8
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 4.8e-61 238.4 127 90.6
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 4.8e-61 238.4 127 90.6
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 6.2e-61 238.0 127 89.8
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 6.2e-61 238.0 127 89.0
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 1.1e-60 237.3 127 89.0
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.1e-60 237.3 127 89.0
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.1e-60 237.3 127 89.0
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.1e-60 237.3 127 89.0
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 1.1e-60 237.3 127 90.6
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 1.4e-60 236.9 127 90.6
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.4e-60 236.9 127 89.8
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 1.4e-60 236.9 127 90.6
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 1.8e-60 236.5 127 90.6
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 1.8e-60 236.5 127 90.6
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 1.8e-60 236.5 127 90.6
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 1.8e-60 236.5 127 90.6
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 1.8e-60 236.5 126 90.5
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 1.8e-60 236.5 127 88.2
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 1.8e-60 236.5 127 89.8
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 2.4e-60 236.1 127 88.2
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 2.4e-60 236.1 127 88.2
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 2.4e-60 236.1 127 90.6
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 2.4e-60 236.1 127 89.0
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 2.4e-60 236.1 127 88.2
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 3.1e-60 235.7 127 88.2
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 4.0e-60 235.3 127 87.4
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 4.0e-60 235.3 127 88.2
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 4.0e-60 235.3 127 89.8
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 4.0e-60 235.3 127 89.8
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 4.0e-60 235.3 127 89.0
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 4.0e-60 235.3 127 89.8
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 5.3e-60 235.0 127 89.8
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 5.3e-60 235.0 127 89.8
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 5.3e-60 235.0 127 90.6
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 88.2
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 88.2
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 88.2
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 88.2
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 88.2
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 88.2
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 6.9e-60 234.6 127 89.0
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 88.2
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 87.4
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 88.2
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 87.4
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 87.4
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 89.8
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 9.0e-60 234.2 127 87.4
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 1.2e-59 233.8 127 89.8
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 1.5e-59 233.4 127 86.6
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.5e-59 233.4 127 87.4
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 2.0e-59 233.0 127 87.4
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 2.6e-59 232.6 127 89.0
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 2.6e-59 232.6 127 87.4
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 3.4e-59 232.3 127 88.2
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 3.4e-59 232.3 127 86.6
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 3.4e-59 232.3 122 91.8
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 5.8e-59 231.5 127 87.4
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 5.8e-59 231.5 127 89.0
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 5.8e-59 231.5 127 90.6
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 7.6e-59 231.1 127 89.0
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 7.6e-59 231.1 127 86.6
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 9.9e-59 230.7 127 89.0
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 1.3e-58 230.3 127 85.8
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 1.3e-58 230.3 127 85.8
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 1.7e-58 229.9 127 88.2
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 2.9e-58 229.2 127 86.6
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 6.4e-58 228.0 127 85.8
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 6.4e-58 228.0 127 85.8
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 1.1e-57 227.3 127 85.8
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 1.4e-57 226.9 126 84.9
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.4e-57 226.9 126 87.3
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 7.1e-57 224.6 127 87.4
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 9.3e-57 224.2 127 85.0
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.6e-56 221.9 127 82.7
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 6.0e-56 221.5 162 72.2
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 6.0e-56 221.5 127 82.7
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.0e-55 220.7 127 82.7
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 3.9e-55 218.8 127 82.7
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 8.7e-55 217.6 127 81.1
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 1.9e-54 216.5 151 72.2
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 2.5e-54 216.1 128 81.2
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 7.4e-54 214.5 111 91.9
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 6.2e-53 211.5 127 82.7
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 6.2e-53 211.5 108 91.7
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 5.8e-51 204.9 127 78.0
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 1.7e-50 203.4 126 78.6
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 7.9e-48 194.5 143 72.7
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.8e-47 193.4 100 93.0
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 1.6e-45 186.8 100 90.0
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 4.1e-44 182.2 127 74.8
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 5.3e-44 181.8 127 74.0
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 2.6e-43 179.5 127 74.0
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 1.1e-38 164.1 120 66.7
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 2.5e-38 162.9 129 60.5
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 1.5e-35 153.7 125 60.0
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 2.0e-35 153.3 80 88.8
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 3.8e-34 149.1 129 58.1
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 2.3e-31 139.8 90 77.8
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 9.1e-28 127.9 124 46.0
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 1.6e-24 117.1 129 48.8
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 1.6e-19 100.5 170 40.6
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 3.0e-15 86.3 117 41.9
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 1.2e-14 84.3 67 71.6


User provided reference genes

Program Settings