Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 0.0e+00 1371.7 694 100.0
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 694 76.2
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 2.0e-300 1035.4 695 76.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 5.0e-296 1020.8 692 75.4
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 6.6e-296 1020.4 692 75.1
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 2.3e-293 1011.9 692 74.7
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 5.2e-293 1010.7 692 74.7
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 8.9e-293 1010.0 694 74.8
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.7e-291 1005.7 697 73.5
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 2.2e-291 1005.4 695 74.7
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 3.2e-290 1001.5 693 73.2
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 4.1e-290 1001.1 697 73.3
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 1.6e-289 999.2 695 73.2
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.0e-289 998.8 693 73.0
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.7e-289 998.4 690 73.0
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 4.6e-289 997.7 692 73.4
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 3.0e-288 995.0 691 72.9
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 6.6e-288 993.8 693 72.7
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 5.6e-287 990.7 694 73.2
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 5.6e-287 990.7 743 69.4
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 7.3e-287 990.3 696 72.1
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 2.8e-286 988.4 691 72.9
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.1e-285 986.5 691 72.6
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 1.1e-285 986.5 699 71.5
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 2.0e-284 982.2 693 72.9
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 1.3e-283 979.5 690 71.9
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 1.7e-283 979.2 694 71.8
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 2.2e-283 978.8 729 70.5
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 6.4e-283 977.2 694 72.2
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 1.1e-282 976.5 693 72.0
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 2.4e-282 975.3 742 69.1
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 5.4e-282 974.2 691 72.2
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 9.2e-282 973.4 693 71.4
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.7e-281 971.8 692 71.2
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 4.6e-281 971.1 690 71.9
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 2.3e-280 968.8 690 72.2
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 3.0e-280 968.4 691 71.8
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 3.9e-280 968.0 691 72.2
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.1e-279 966.5 695 72.2
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.1e-279 966.5 691 71.8
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.9e-279 965.7 694 71.9
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 2.5e-279 965.3 694 70.9
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 1.2e-278 963.0 690 72.2
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 1.2e-278 963.0 691 71.3
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 2.1e-278 962.2 691 71.8
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 2.1e-278 962.2 690 71.6
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 3.6e-278 961.4 692 71.1
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 3.6e-278 961.4 691 71.6
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 4.7e-278 961.1 693 71.3
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 4.7e-278 961.1 690 70.7
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 6.2e-278 960.7 695 70.8
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 3.4e-276 954.9 694 71.5
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.6e-276 953.7 694 71.2
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 7.6e-276 953.7 692 70.7
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 9.9e-276 953.4 707 69.9
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 2.9e-275 951.8 704 68.9
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.9e-274 949.1 695 69.9
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 5.4e-274 947.6 692 70.1
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.7e-273 945.3 721 66.9
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 3.5e-273 944.9 693 69.8
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 7.8e-273 943.7 692 69.8
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.7e-272 942.6 690 70.7
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.7e-272 942.6 693 70.3
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 1.1e-271 939.9 674 71.4
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 1.9e-271 939.1 695 69.2
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 2.5e-271 938.7 695 69.2
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.6e-270 936.0 693 69.6
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 1.6e-270 936.0 797 62.1
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 3.6e-270 934.9 693 70.0
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 4.7e-270 934.5 693 69.1
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 8.1e-270 933.7 693 69.1
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 8.1e-270 933.7 693 69.3
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.8e-269 932.6 690 69.4
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-268 929.9 693 68.8
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 4.4e-268 927.9 693 68.8
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 4.4e-268 927.9 693 68.8
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 1.3e-267 926.4 693 68.7
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 1.3e-267 926.4 693 68.7
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 2.4e-266 922.2 649 72.4
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 8.7e-264 913.7 693 67.8
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 4.3e-263 911.4 693 68.0
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.4e-261 906.4 695 67.8
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 1.8e-261 906.0 691 67.3
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.1e-258 896.7 691 66.3
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 9.3e-258 893.6 695 66.8
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 6.0e-249 864.4 550 80.0
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 6.0e-241 837.8 723 60.9
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.3e-240 836.6 567 74.8
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 2.1e-238 829.3 1197 43.6
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 3.9e-232 808.5 721 57.7
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 4.3e-231 805.1 692 61.7
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 3.9e-224 781.9 543 75.3
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 5.7e-223 778.1 769 56.6
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.2e-212 743.8 472 79.0
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 5.2e-208 728.4 644 57.5
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.6e-204 716.8 693 56.0
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 2.0e-191 673.3 513 67.6
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.2e-188 664.1 416 78.6
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 2.8e-185 652.9 519 64.7
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 6.2e-169 598.6 689 53.4
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 7.4e-138 495.4 710 41.1
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.2e-132 478.0 711 39.5
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 2.5e-130 470.3 711 39.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 5.0e-118 429.5 265 81.5
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 3.1e-112 410.2 691 41.1
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 6.9e-112 409.1 473 46.3
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.4e-104 384.0 230 82.2
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.7e-102 377.9 275 73.1
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.2e-102 377.5 692 39.0
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 2.4e-96 357.5 420 51.4
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.5e-93 347.4 660 38.5
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 8.0e-76 289.3 297 55.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 8.9e-67 259.2 248 56.9
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 3.7e-65 253.8 167 73.1
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 5.4e-64 250.0 199 66.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.8e-55 219.5 221 55.2
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.8e-43 181.8 136 71.3
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.8e-43 181.8 136 71.3
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 5.6e-37 160.2 101 74.3
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.5e-34 152.1 125 68.0
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.0e-30 139.4 115 55.7
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.4e-24 119.0 86 64.0
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 8.7e-14 83.2 148 37.8
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 5.6e-13 80.5 68 54.4
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 5.6e-13 80.5 64 65.6
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 4.9e-09 67.4 77 59.7


User provided reference genes

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