Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 7.1e-47 190.7 128 100.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.5e-36 156.4 98 86.7
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 4.8e-19 98.2 57 86.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 4.8e-19 98.2 59 72.9
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 8.2e-19 97.4 59 72.9
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 8.2e-19 97.4 63 74.6
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.4e-18 96.7 74 64.9
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 3.1e-18 95.5 72 65.3
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 4.1e-18 95.1 57 78.9
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 5.3e-18 94.7 43 95.3
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.3e-18 94.7 105 55.2
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.3e-18 94.7 87 78.2
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 5.3e-18 94.7 62 80.6
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.0e-18 94.4 88 60.2
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.0e-18 94.4 57 84.2
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.0e-18 94.4 57 84.2
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 7.0e-18 94.4 57 84.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 7.0e-18 94.4 94 55.3
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 9.1e-18 94.0 57 73.7
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.2e-17 93.6 118 53.4
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-17 93.6 53 77.4
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.2e-17 93.6 57 73.7
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.6e-17 93.2 63 69.8
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.0e-17 92.8 59 79.7
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.6e-17 92.4 53 75.5
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-17 92.0 95 50.5
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.5e-17 91.7 89 51.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 4.5e-17 91.7 77 58.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 4.5e-17 91.7 77 58.4
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 5.9e-17 91.3 88 55.7
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 5.9e-17 91.3 56 85.7
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 7.7e-17 90.9 110 54.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.7e-17 90.9 46 84.8
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.7e-17 90.9 45 86.7
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 7.7e-17 90.9 45 86.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.0e-16 90.5 70 72.9
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-16 90.5 57 71.9
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.3e-16 90.1 59 69.5
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.3e-16 90.1 59 69.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.3e-16 90.1 59 69.5
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.3e-16 90.1 57 71.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.7e-16 89.7 69 72.5
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.2e-16 89.4 56 85.7
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.2e-16 89.4 56 85.7
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 2.2e-16 89.4 56 82.1
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.9e-16 89.0 43 90.7
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.9e-16 89.0 56 71.4
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 2.9e-16 89.0 56 71.4
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.8e-16 88.6 56 71.4
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.8e-16 88.6 53 73.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 3.8e-16 88.6 92 51.1
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.8e-16 88.6 53 73.6
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 3.8e-16 88.6 92 51.1
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 3.8e-16 88.6 92 51.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 3.8e-16 88.6 53 73.6
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.8e-16 88.6 50 96.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 5.0e-16 88.2 53 73.6
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.0e-16 88.2 57 77.2
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 5.0e-16 88.2 50 88.0
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.1e-15 87.0 43 83.7
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.5e-15 86.7 75 58.7
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 2.5e-15 85.9 55 83.6
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.5e-15 85.9 50 92.0
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.2e-15 85.1 59 66.1
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 5.5e-15 84.7 43 81.4
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.2e-15 84.3 50 76.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 7.2e-15 84.3 56 64.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 9.4e-15 84.0 88 61.4
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 9.4e-15 84.0 45 82.2
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 9.4e-15 84.0 99 51.5
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 9.4e-15 84.0 49 79.6
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.2e-14 83.6 39 89.7
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.2e-14 83.6 91 48.4
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 2.1e-14 82.8 56 69.6
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.1e-14 82.8 39 87.2
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.1e-14 82.8 39 87.2
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.7e-14 82.4 55 83.6
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 3.6e-14 82.0 59 61.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 3.6e-14 82.0 57 78.9
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 4.7e-14 81.6 79 50.6
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 4.7e-14 81.6 39 92.3
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 4.7e-14 81.6 94 55.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.1e-14 81.3 59 78.0
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 6.1e-14 81.3 58 67.2
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.0e-14 80.9 44 84.1
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 8.0e-14 80.9 53 73.6
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.0e-13 80.5 43 79.1
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.4e-13 80.1 57 78.9
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.4e-13 80.1 38 94.7
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.8e-13 79.7 41 82.9
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.3e-13 79.3 42 81.0
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.3e-13 79.3 39 87.2
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.3e-13 79.3 39 87.2
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.3e-13 79.3 39 87.2
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.0e-13 79.0 42 81.0
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 4.0e-13 78.6 38 89.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 4.0e-13 78.6 39 82.1
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.2e-13 78.2 53 66.0
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 5.2e-13 78.2 86 65.1
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 5.2e-13 78.2 37 83.8
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.8e-13 77.8 91 50.5
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 6.8e-13 77.8 57 64.9
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 8.8e-13 77.4 88 51.1
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.2e-12 77.0 48 72.9
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.5e-12 76.6 46 76.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.5e-12 76.6 46 76.1
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.5e-12 76.6 39 84.6
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.5e-12 76.6 38 81.6
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.5e-12 76.6 35 91.4
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.0e-12 76.3 76 51.3
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 2.6e-12 75.9 40 82.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 3.4e-12 75.5 36 88.9
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.4e-12 75.5 35 88.6
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.4e-12 75.1 50 80.0
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 5.7e-12 74.7 40 82.5
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 5.7e-12 74.7 36 91.7
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 7.5e-12 74.3 36 88.9
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 2.2e-11 72.8 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 2.2e-11 72.8 35 88.6
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.8e-11 72.4 38 81.6
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.8e-11 72.4 38 81.6
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 4.8e-11 71.6 72 61.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 4.8e-11 71.6 44 68.2
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.4e-10 70.1 92 48.9
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 2.4e-10 69.3 37 75.7
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 3.1e-10 68.9 111 41.4
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 5.9e-09 64.7 43 60.5
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 2.7e-06 55.8 52 53.8
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 3.6e-06 55.5 42 71.4


User provided reference genes

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