Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.9e-177 624.4 326 100.0
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.3e-20 104.8 413 28.8
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.1e-19 101.7 441 28.6
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.5e-19 100.5 355 30.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.2e-18 98.2 118 47.5
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.1e-18 97.4 195 36.4
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.7e-18 96.3 259 30.9
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.3e-17 94.0 109 45.9
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.0e-17 93.2 143 41.3
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 4.0e-17 93.2 182 34.1
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 6.7e-17 92.4 394 27.9
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 6.7e-17 92.4 425 27.1
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.6e-16 90.5 390 27.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-16 90.5 248 31.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.3e-16 90.1 364 26.9
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 4.4e-16 89.7 113 44.2
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 4.4e-16 89.7 118 45.8
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.4e-16 89.7 216 33.8
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 7.5e-16 89.0 101 44.6
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.5e-16 89.0 406 27.6
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 7.5e-16 89.0 112 44.6
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 9.7e-16 88.6 143 39.9
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-15 88.2 354 27.7
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.3e-15 88.2 103 46.6
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.7e-15 87.8 196 34.2
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.7e-15 87.8 272 30.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 2.2e-15 87.4 168 36.3
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.8e-15 87.0 194 33.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.7e-15 86.7 354 27.1
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.7e-15 86.7 242 30.6
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.7e-15 86.7 253 32.4
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 4.8e-15 86.3 142 40.8
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 6.3e-15 85.9 101 45.5
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 6.3e-15 85.9 224 31.7
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.3e-15 85.9 242 29.8
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.2e-15 85.5 240 33.8
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.2e-15 85.5 157 36.9
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 8.2e-15 85.5 245 31.0
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-14 85.1 239 32.2
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-14 85.1 239 32.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.1e-14 85.1 194 34.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.4e-14 84.7 256 29.3
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.8e-14 84.3 147 39.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.1e-14 83.6 254 33.9
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.1e-14 83.6 130 40.8
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.1e-14 83.6 125 40.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.1e-14 83.2 152 38.2
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.3e-14 82.8 170 35.9
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.3e-14 82.8 108 39.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.0e-14 82.4 223 31.4
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 9.1e-14 82.0 376 26.6
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 9.1e-14 82.0 113 42.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.1e-14 82.0 354 27.4
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 9.1e-14 82.0 324 28.1
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.2e-13 81.6 249 28.9
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.2e-13 81.6 227 31.3
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.2e-13 81.6 113 43.4
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.6e-13 81.3 241 30.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.6e-13 81.3 209 35.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.0e-13 80.9 181 34.3
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.0e-13 80.9 239 29.7
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 2.7e-13 80.5 138 37.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.5e-13 80.1 172 34.3
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.5e-13 80.1 361 27.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 3.5e-13 80.1 157 35.7
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 4.5e-13 79.7 159 36.5
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 4.5e-13 79.7 113 39.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 5.9e-13 79.3 454 26.7
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 5.9e-13 79.3 167 32.3
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.9e-13 79.3 124 38.7
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 7.7e-13 79.0 272 29.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.0e-12 78.6 111 39.6
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.3e-12 78.2 127 40.2
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.7e-12 77.8 336 28.6
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.7e-12 77.8 108 39.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.7e-12 77.8 113 38.9
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.2e-12 77.4 271 29.2
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 2.2e-12 77.4 203 33.5
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.2e-12 77.4 259 29.3
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.2e-12 77.4 113 40.7
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.2e-12 77.4 152 35.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.9e-12 77.0 154 33.1
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.9e-12 77.0 214 29.4
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.9e-12 77.0 117 38.5
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 3.8e-12 76.6 181 34.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.0e-12 76.3 154 33.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 6.5e-12 75.9 264 31.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 8.5e-12 75.5 413 26.2
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.1e-11 75.1 237 29.5
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.1e-11 75.1 284 30.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.1e-11 75.1 117 36.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.1e-11 75.1 417 26.6
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.9e-11 74.3 134 32.8
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.9e-11 74.3 390 25.6
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.5e-11 73.9 415 26.5
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 4.2e-11 73.2 213 32.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 7.2e-11 72.4 124 36.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 7.2e-11 72.4 84 42.9
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.2e-11 72.4 84 42.9
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 9.4e-11 72.0 156 34.0
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.6e-10 71.2 113 34.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-10 71.2 160 31.2
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.1e-10 70.9 418 23.9
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.1e-10 70.9 141 35.5
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 2.7e-10 70.5 101 42.6
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.7e-10 70.5 114 35.1
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.7e-10 70.5 183 30.1
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.6e-10 70.1 79 45.6
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.6e-10 70.1 241 30.7
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 3.6e-10 70.1 256 28.9
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.7e-10 69.7 266 30.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 6.1e-10 69.3 398 24.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 6.1e-10 69.3 201 31.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 6.1e-10 69.3 77 46.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 8.0e-10 68.9 79 44.3
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 8.0e-10 68.9 113 37.2
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.0e-10 68.9 387 23.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-09 68.2 79 43.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.4e-09 68.2 194 32.0
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.4e-09 68.2 237 27.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.4e-09 68.2 240 28.3
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.8e-09 67.8 124 33.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.3e-09 67.4 414 24.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.3e-09 67.4 77 46.8
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.3e-09 67.4 77 46.8
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 5.2e-09 66.2 227 30.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 6.8e-09 65.9 405 24.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 8.8e-09 65.5 72 47.2
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 2.6e-08 63.9 410 24.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.7e-08 62.8 229 23.1
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 5.7e-08 62.8 104 38.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.8e-08 62.0 104 38.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.8e-08 62.0 93 38.7
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.7e-07 61.2 116 32.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.2e-07 60.8 403 23.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.8e-07 60.5 238 27.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.8e-07 60.5 98 38.8
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.3e-07 58.9 382 23.3
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.1e-06 58.5 232 30.6
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-06 58.2 98 37.8
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-06 57.8 385 25.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.4e-06 57.4 232 29.7
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 5.4e-06 56.2 232 29.3
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 7.0e-06 55.8 116 35.3


User provided reference genes

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