Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 0.0e+00 1173.3 625 100.0
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 9.7e-222 773.9 623 64.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.3e-220 768.1 440 95.7
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 9.0e-220 767.3 626 67.6
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.0e-218 763.8 625 63.4
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 3.2e-217 758.8 630 67.6
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 3.0e-215 752.3 612 67.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.9e-214 749.6 626 61.3
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.8e-213 745.0 631 60.5
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 9.1e-212 740.7 633 64.3
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.0e-211 739.6 627 65.1
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 7.9e-208 727.6 630 63.5
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 2.0e-206 723.0 618 60.0
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 5.7e-206 721.5 641 58.7
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 9.7e-206 720.7 641 58.7
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 2.2e-205 719.5 628 63.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 5.3e-204 714.9 630 62.1
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.1e-204 714.1 628 59.2
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.0e-203 713.0 630 59.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.9e-203 711.4 625 57.8
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.7e-200 702.6 630 60.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.6e-200 702.2 629 58.5
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.0e-199 700.7 627 57.1
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.4e-199 700.3 627 61.7
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.4e-199 700.3 628 57.2
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.8e-199 699.9 635 60.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.8e-199 699.9 630 57.6
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 3.0e-199 699.1 628 58.3
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 5.2e-199 698.4 635 57.0
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 5.2e-199 698.4 626 57.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.5e-198 696.8 635 60.3
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.0e-198 696.4 590 60.8
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.4e-198 695.3 630 57.3
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 7.4e-198 694.5 618 61.0
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 7.4e-198 694.5 627 56.8
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 9.7e-198 694.1 618 61.0
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.7e-197 693.3 628 57.3
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 3.7e-197 692.2 630 60.5
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 8.2e-197 691.0 629 56.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.1e-196 690.6 629 56.6
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-196 689.5 627 56.8
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 4.1e-196 688.7 635 56.9
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 5.3e-196 688.3 616 57.5
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.3e-196 688.3 623 62.1
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 7.0e-196 688.0 630 57.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 9.1e-196 687.6 616 60.2
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 9.1e-196 687.6 627 57.6
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.5e-195 685.6 626 60.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 3.5e-195 685.6 590 59.8
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 7.7e-195 684.5 624 61.1
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.0e-194 684.1 629 56.0
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.2e-194 682.9 629 56.0
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.9e-194 682.6 637 56.2
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.1e-193 680.6 619 56.1
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.9e-193 679.9 634 60.7
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 3.2e-193 679.1 630 56.8
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.2e-192 677.2 629 57.1
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.6e-192 676.8 634 57.3
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.6e-192 676.8 630 55.7
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.6e-192 675.6 626 61.5
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 4.7e-192 675.2 624 55.9
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.0e-191 674.1 624 55.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.0e-191 674.1 626 61.5
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.4e-191 673.7 628 57.0
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.0e-191 672.5 630 54.3
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.0e-191 672.2 630 55.2
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.5e-190 670.2 631 54.8
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 7.5e-190 667.9 623 54.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.8e-189 666.0 623 54.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 3.7e-189 665.6 611 61.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 4.8e-189 665.2 644 55.4
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.8e-189 665.2 638 58.8
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 4.5e-187 658.7 628 58.8
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.9e-186 656.0 646 57.0
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 5.0e-186 655.2 622 53.5
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.5e-185 653.7 625 55.2
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.2e-184 650.6 628 53.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.5e-182 643.7 635 55.1
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.0e-182 643.3 638 58.2
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 6.3e-181 638.3 629 52.8
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 8.3e-181 637.9 629 52.9
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.4e-180 636.3 630 52.9
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-179 634.0 646 57.4
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 2.0e-179 633.3 629 57.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.5e-177 627.1 634 52.4
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 5.5e-177 625.2 626 52.9
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 7.5e-174 614.8 651 50.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.7e-173 613.6 677 49.3
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.1e-172 610.9 633 52.0
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.2e-171 607.4 609 53.4
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 2.5e-169 599.7 735 46.4
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 9.8e-166 587.8 624 50.2
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.9e-165 586.3 682 49.0
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 4.6e-163 578.9 623 55.4
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.0e-162 577.8 652 47.7
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.4e-159 567.4 746 43.7
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 3.1e-159 566.2 688 45.3
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.1e-159 566.2 617 53.0
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 4.4e-158 562.4 604 53.5
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 7.5e-158 561.6 522 55.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.4e-156 557.4 629 52.3
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 4.1e-156 555.8 652 47.7
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.3e-154 550.1 620 47.3
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.3e-146 524.2 608 46.5
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 6.2e-144 515.4 622 46.1
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 6.9e-135 485.3 659 44.9
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 8.7e-130 468.4 521 47.2
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 9.3e-116 421.8 443 50.6
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.0e-102 377.5 457 50.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.0e-101 375.2 430 49.1
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 5.0e-101 372.9 330 56.4
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.1e-100 371.7 346 54.3
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.7e-98 362.5 432 47.2
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.8e-90 337.8 421 45.4
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.0e-87 325.9 414 44.7
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.8e-85 320.1 421 43.7
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-81 307.0 422 42.4
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.4e-81 306.6 422 42.4
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.3e-79 299.7 399 43.1
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.5e-76 291.6 584 29.8
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.2e-75 288.5 584 32.5
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.6e-75 288.1 195 70.8
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.5e-73 279.3 387 42.6
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.5e-68 265.0 537 33.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.0e-67 259.2 427 37.7
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.5e-65 255.0 584 30.7
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.6e-59 233.8 588 28.7
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-51 208.4 205 56.1
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 6.1e-51 206.5 167 61.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 9.8e-49 199.1 264 43.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 4.3e-44 183.7 515 25.2
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.7e-40 171.8 177 50.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.4e-33 147.5 104 67.3
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.5e-33 146.4 74 98.6
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.1e-31 142.5 98 68.4
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.7e-30 137.9 276 33.7
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.5e-30 137.5 249 34.9
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.0e-29 134.4 132 51.5
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.1e-28 132.5 197 39.1
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.1e-27 128.3 102 60.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.0e-26 124.0 94 59.6
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 6.4e-24 116.7 105 52.4
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-23 115.5 89 61.8
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.0e-21 109.4 87 56.3
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.3e-20 104.0 127 40.9
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 1.4e-18 99.0 84 54.8
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 3.1e-18 97.8 162 39.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 3.3e-12 77.8 68 51.5
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 3.3e-12 77.8 68 51.5
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.3e-11 75.9 44 72.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.3e-11 75.9 44 72.7
CDE04G1519 Ceratophyllum demersum HOM05D003295 ORTHO05D004003 2.1e-11 75.1 104 51.0
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.6e-11 74.3 71 50.7
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.4e-10 72.4 67 50.7
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 2.0e-09 68.6 96 41.7


User provided reference genes

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