Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.1e-281 972.6 471 100.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.0e-225 783.9 402 94.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.8e-159 566.6 408 69.1
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 3.7e-157 558.9 407 67.3
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.7e-154 550.1 405 68.1
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 6.1e-152 541.6 407 66.3
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.4e-150 534.6 404 63.4
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-148 530.4 404 65.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.4e-147 525.8 403 64.8
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.3e-146 523.9 400 65.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.0e-146 521.9 405 64.7
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.5e-145 519.6 404 63.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 9.4e-145 517.7 405 61.7
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.6e-144 516.9 405 62.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.1e-144 516.5 402 62.7
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.1e-144 516.5 405 62.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.7e-144 516.2 405 61.7
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.6e-144 515.8 404 61.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 3.6e-144 515.8 402 62.2
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 2.3e-143 513.1 405 62.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.0e-142 510.0 405 61.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.6e-142 509.6 400 62.2
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.6e-142 509.6 405 60.0
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.6e-142 509.6 407 61.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.6e-142 509.6 405 59.5
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.3e-142 509.2 407 62.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 3.3e-142 509.2 397 62.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.3e-142 509.2 401 59.6
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 5.7e-142 508.4 400 63.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.7e-142 508.4 407 60.2
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 7.4e-142 508.1 407 60.4
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 7.4e-142 508.1 406 60.8
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.3e-141 507.3 407 61.4
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.3e-141 507.3 407 60.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.2e-141 506.5 405 59.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.8e-141 506.1 400 62.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.3e-141 505.0 406 61.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.2e-141 504.6 400 62.2
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-140 504.2 402 62.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.8e-140 503.4 400 62.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.8e-140 503.4 406 61.6
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.4e-140 503.1 403 61.3
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.1e-140 502.3 407 60.7
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 4.1e-140 502.3 392 63.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 7.0e-140 501.5 401 62.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 9.1e-140 501.1 406 61.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-139 500.7 402 61.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-139 499.6 402 61.7
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.6e-139 499.6 409 60.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.7e-138 496.9 409 60.1
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.7e-138 496.9 399 61.7
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.9e-138 496.1 413 58.6
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.5e-137 493.8 406 59.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.5e-137 493.8 414 58.7
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.9e-137 493.4 402 61.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.2e-137 492.7 400 60.8
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.2e-137 491.5 406 59.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.6e-136 490.3 406 59.4
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.8e-135 486.9 406 59.4
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.3e-135 486.5 401 59.1
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.2e-134 484.2 409 58.4
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.2e-134 484.2 406 59.1
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.0e-134 483.4 406 58.9
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.3e-134 482.6 403 59.3
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 5.3e-132 475.3 401 58.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.7e-131 473.0 405 59.8
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.5e-131 472.6 395 60.3
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 7.7e-131 471.5 433 55.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.3e-130 470.7 406 57.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.3e-130 470.7 402 59.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.8e-130 469.2 405 59.5
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.5e-129 466.5 404 57.4
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.5e-129 466.5 405 58.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.2e-129 465.7 405 58.8
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 5.2e-127 458.8 405 56.3
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.2e-125 453.4 407 54.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.8e-125 453.0 406 56.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-124 449.9 407 55.3
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 2.4e-124 449.9 407 56.0
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 7.7e-123 444.9 406 54.9
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 7.7e-123 444.9 387 55.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 7.7e-123 444.9 409 55.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.1e-120 436.8 410 55.9
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.0e-119 434.5 407 53.3
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.0e-119 433.0 402 53.7
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 3.0e-119 433.0 407 54.8
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.2e-118 431.0 407 52.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.8e-117 426.4 406 52.5
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 3.7e-117 426.0 405 52.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.8e-116 423.7 407 52.6
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.4e-116 423.3 402 52.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 5.4e-116 422.2 407 52.3
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 9.2e-116 421.4 412 51.9
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.5e-115 419.1 324 64.8
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.5e-115 419.1 324 64.8
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 7.8e-115 418.3 405 50.9
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-112 411.0 400 51.8
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.8e-112 409.8 407 51.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.3e-111 406.8 400 51.2
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.3e-111 406.8 400 51.5
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.4e-110 402.9 407 51.4
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.4e-110 402.5 401 51.6
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 5.8e-110 402.1 400 50.5
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 7.5e-110 401.7 400 50.8
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.7e-109 400.6 399 51.4
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.9e-109 399.8 400 50.8
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.9e-109 399.8 402 51.2
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.9e-109 399.1 400 50.0
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.4e-109 398.7 400 50.2
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.3e-109 398.3 399 50.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-108 397.5 401 49.6
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.9e-108 397.1 400 49.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.9e-108 397.1 402 53.0
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.4e-108 396.7 400 50.0
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 4.1e-108 396.0 399 51.1
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 7.0e-108 395.2 400 49.5
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 7.0e-108 395.2 398 50.8
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.6e-107 394.0 401 51.4
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.5e-107 392.9 401 50.4
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.5e-107 392.9 401 50.4
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 6.0e-107 392.1 400 47.8
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 6.0e-107 392.1 401 47.1
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 6.0e-107 392.1 401 47.1
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 6.0e-107 392.1 398 49.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.0e-107 392.1 398 51.3
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 7.8e-107 391.7 400 47.8
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.0e-106 391.3 399 49.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-106 390.2 399 49.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-106 390.2 399 49.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-106 389.8 399 48.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.0e-106 389.8 394 50.8
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-105 387.9 398 49.0
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-105 387.5 403 49.9
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.9e-105 387.1 400 49.8
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-105 386.7 394 50.5
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.2e-104 384.4 401 48.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.7e-104 382.5 400 48.8
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 6.2e-104 382.1 403 47.9
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.0e-102 377.1 405 48.1
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.8e-102 374.8 419 45.8
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.2e-101 373.6 399 47.6
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.4e-101 372.1 404 48.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 7.8e-99 365.2 399 48.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.3e-98 364.4 406 46.1
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.3e-98 363.6 419 43.9
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.6e-98 362.1 406 45.1
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-97 360.5 419 44.2
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.3e-97 359.8 405 46.7
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.3e-97 358.6 415 45.3
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.6e-96 356.3 419 43.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 8.9e-95 351.7 401 45.1
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.2e-94 351.3 412 45.4
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 5.8e-78 295.8 350 46.9
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-77 294.7 408 41.9
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.2e-76 289.7 324 44.8
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.9e-69 266.9 214 63.1
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.4e-63 247.3 261 50.6
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-56 224.6 206 51.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.1e-56 224.2 206 51.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-55 221.5 162 65.4
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 5.7e-49 199.5 165 60.0
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.4e-46 190.3 147 63.9
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.8e-42 177.9 312 39.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 4.1e-31 140.2 151 49.7
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 4.1e-23 113.6 130 43.8
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.4e-18 98.6 96 44.8
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 8.8e-18 95.9 94 50.0
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 9.8e-17 92.4 82 53.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.8e-16 90.9 87 46.0
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 5.4e-15 86.7 89 44.9
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.2e-10 70.1 71 50.7
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.4e-07 60.1 83 38.6
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-06 58.2 49 53.1


User provided reference genes

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