Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 4.7e-168 594.3 278 100.0
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.6e-86 322.8 240 63.3
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 4.9e-85 318.5 224 63.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.1e-84 317.4 221 62.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.4e-84 317.0 218 64.2
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 5.5e-84 315.1 218 64.7
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.2e-83 313.9 224 64.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 7.9e-83 311.2 221 59.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 3.0e-82 309.3 221 62.4
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.9e-82 308.9 221 62.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.3e-81 305.8 221 60.6
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 7.4e-81 304.7 223 61.0
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 9.6e-81 304.3 221 60.6
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 8.2e-80 301.2 220 60.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-79 300.8 222 59.5
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.4e-79 300.4 221 58.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.4e-79 300.4 217 61.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.8e-79 300.1 222 60.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 3.1e-79 299.3 221 57.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.0e-79 298.9 219 58.9
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.3e-79 298.5 219 58.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 6.9e-79 298.1 220 57.7
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 9.0e-79 297.7 221 58.8
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.2e-78 297.4 221 58.8
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.2e-78 297.4 222 59.0
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.2e-78 297.4 219 58.0
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.5e-78 297.0 221 57.5
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.5e-78 297.0 217 58.1
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 3.4e-78 295.8 220 60.5
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 4.5e-78 295.4 215 60.0
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 4.5e-78 295.4 216 59.7
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 5.8e-78 295.0 221 57.0
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 5.8e-78 295.0 214 58.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 5.8e-78 295.0 233 58.8
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 7.6e-78 294.7 228 57.9
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.0e-77 294.3 222 56.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.2e-77 293.1 222 59.9
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.9e-77 292.7 221 60.6
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 3.8e-77 292.4 218 57.8
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 4.9e-77 292.0 224 57.1
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 6.5e-77 291.6 216 57.4
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 8.4e-77 291.2 227 59.0
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.1e-76 290.8 220 58.2
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.1e-76 290.8 235 55.7
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.2e-76 289.3 221 58.4
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.2e-76 289.3 229 56.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.5e-76 288.5 225 56.9
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 7.1e-76 288.1 218 57.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 9.3e-76 287.7 224 54.9
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-75 287.3 221 57.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.2e-75 287.3 218 57.8
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.2e-75 287.3 223 56.5
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.2e-75 287.3 216 60.6
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.2e-75 287.3 216 59.7
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-75 287.0 207 59.4
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-75 287.0 207 59.4
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.6e-75 287.0 229 55.9
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.6e-75 287.0 223 57.4
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.1e-75 286.6 229 55.9
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.5e-75 285.8 217 58.5
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.0e-75 285.0 217 59.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 7.9e-75 284.6 216 56.5
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.0e-74 284.3 221 57.0
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.9e-74 282.3 216 58.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 6.7e-74 281.6 213 57.3
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.5e-73 280.4 206 58.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-73 280.4 206 58.7
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.9e-73 280.0 217 58.1
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.9e-73 280.0 206 58.7
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.5e-73 279.6 257 50.6
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 3.3e-73 279.3 206 58.3
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 3.3e-73 279.3 224 55.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 5.7e-73 278.5 221 53.8
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 9.7e-73 277.7 208 59.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.3e-72 277.3 222 56.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.2e-72 276.6 219 58.9
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 4.8e-72 275.4 258 50.8
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.3e-72 275.0 200 59.5
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.2e-72 274.6 235 54.0
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 4.1e-71 272.3 221 57.5
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-70 270.4 200 61.5
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-70 270.0 197 58.9
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 5.0e-69 265.4 200 56.5
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 6.5e-69 265.0 216 55.1
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.2e-67 260.8 219 53.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.6e-67 260.4 198 57.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.1e-67 260.0 219 55.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.1e-67 260.0 197 58.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.3e-66 256.5 226 52.7
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 8.8e-66 254.6 248 50.4
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-65 253.8 281 47.0
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.0e-65 253.4 203 54.7
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.3e-64 250.8 199 55.3
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.3e-64 250.8 194 57.7
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.8e-64 248.8 203 53.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-63 247.7 214 52.8
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-62 243.0 200 56.0
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 3.4e-62 242.7 231 50.2
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 5.0e-61 238.8 192 57.3
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 4.2e-60 235.7 221 51.1
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.2e-59 234.2 185 55.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 2.6e-57 226.5 181 56.9
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.3e-56 224.2 182 54.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.7e-56 223.8 243 45.7
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 8.2e-56 221.5 253 43.9
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 8.5e-53 211.5 226 46.5
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.6e-51 207.2 214 45.8
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 3.0e-50 203.0 141 61.0
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.2e-50 202.2 182 50.5
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 6.7e-50 201.8 227 44.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.4e-47 194.1 183 49.2
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.8e-47 193.7 221 45.7
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.0e-45 188.0 216 44.9
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.7e-45 187.2 144 57.6
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.2e-45 186.8 142 60.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 7.2e-44 181.8 147 53.1
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 9.4e-44 181.4 133 60.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.1e-43 180.3 143 54.5
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 8.0e-43 178.3 140 56.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.0e-42 177.9 125 60.0
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.2e-40 170.2 223 40.4
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 4.5e-38 162.5 216 38.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 7.7e-38 161.8 113 58.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.0e-34 151.4 359 29.2
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-33 147.5 110 59.1
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 2.0e-33 147.1 133 49.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 3.4e-33 146.4 115 53.9
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 9.8e-33 144.8 124 54.8
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-29 134.4 85 63.5
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.7e-29 134.0 199 37.7
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 2.9e-29 133.3 90 64.4
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.1e-28 131.3 221 33.9
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.1e-28 131.3 105 53.3
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.5e-25 120.9 99 56.6
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.0e-25 120.6 256 28.1
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.8e-25 118.2 102 54.9
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.3e-24 117.9 102 54.9
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-24 117.9 116 46.6
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.7e-24 117.5 102 54.9
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.8e-24 116.7 149 42.3
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 3.2e-23 113.2 76 68.4
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 4.3e-20 102.8 98 50.0
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 8.0e-19 98.6 74 58.1
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.3e-18 97.1 202 30.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 3.1e-18 96.7 56 69.6
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.4e-17 92.8 69 59.4
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-16 91.3 65 55.4
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-16 90.9 69 58.0
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-16 90.5 65 55.4
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.7e-16 89.7 65 56.9
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 4.3e-12 76.3 100 39.0
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 8.9e-10 68.6 83 42.2
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 3.4e-09 66.6 65 43.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 5.8e-09 65.9 59 49.2
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 5.8e-09 65.9 94 36.2
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.4e-08 62.4 45 55.6
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.1e-07 61.6 43 60.5
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 5.4e-07 59.3 137 25.5
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 2.7e-06 57.0 31 77.4
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 7.8e-06 55.5 35 71.4


User provided reference genes

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