Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.1e-119 431.8 216 100.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.7e-98 360.9 224 82.6
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.2e-73 280.4 217 62.2
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.3e-72 276.9 214 65.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 6.4e-72 274.6 226 59.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 7.0e-71 271.2 217 60.4
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 9.2e-71 270.8 211 64.0
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.7e-70 269.2 223 58.7
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.5e-70 268.9 216 59.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.7e-69 266.5 220 60.9
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.9e-69 265.4 215 61.4
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 6.6e-69 264.6 215 62.3
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 8.6e-69 264.2 214 61.7
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.6e-68 261.5 215 60.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.3e-68 261.2 217 59.0
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.2e-67 260.4 217 58.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.6e-67 260.0 222 59.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.6e-67 260.0 216 60.2
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.6e-67 260.0 215 60.0
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 2.1e-67 259.6 220 59.1
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.6e-67 258.8 212 59.9
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 8.0e-67 257.7 213 58.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 8.0e-67 257.7 214 59.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 8.0e-67 257.7 215 59.5
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.4e-66 256.9 241 56.0
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.8e-66 256.5 213 58.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.8e-66 256.5 234 55.6
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.3e-66 256.1 217 58.5
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.3e-66 256.1 217 56.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.3e-66 256.1 220 58.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 2.3e-66 256.1 224 57.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 5.2e-66 255.0 219 58.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.2e-66 255.0 223 57.4
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 8.9e-66 254.2 218 58.3
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.2e-65 253.8 218 58.3
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.2e-65 253.8 215 57.2
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 2.0e-65 253.1 217 58.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 2.0e-65 253.1 212 58.0
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.6e-65 252.7 218 59.6
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.6e-65 252.7 241 52.7
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.4e-65 252.3 219 57.1
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.4e-65 252.3 215 57.7
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 4.4e-65 251.9 218 58.7
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.8e-65 251.5 218 56.9
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 7.5e-65 251.1 218 59.2
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 7.5e-65 251.1 218 54.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.3e-64 250.4 214 57.5
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.7e-64 250.0 220 55.0
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.7e-64 250.0 213 56.3
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.7e-64 250.0 222 57.7
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-64 249.6 218 55.0
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.2e-64 249.6 214 58.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.2e-64 249.6 214 56.5
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.2e-64 249.6 217 55.8
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.9e-64 249.2 211 58.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.9e-64 249.2 213 55.4
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.9e-64 248.4 215 59.5
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 4.9e-64 248.4 213 55.9
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.1e-63 247.3 225 54.7
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-63 247.3 222 54.1
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-63 247.3 220 56.4
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.9e-63 246.5 214 56.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.9e-63 246.5 220 55.5
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.9e-63 246.5 216 57.4
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.4e-63 246.1 221 56.6
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-63 246.1 221 55.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.2e-63 245.7 215 57.2
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.2e-63 245.7 243 50.2
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.1e-63 245.4 229 54.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.4e-63 245.0 223 53.8
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 7.0e-63 244.6 212 56.6
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 7.0e-63 244.6 221 55.2
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 7.0e-63 244.6 218 54.1
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.2e-63 244.2 218 54.1
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 9.2e-63 244.2 216 56.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.2e-62 243.8 216 54.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-62 243.4 222 55.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 3.5e-62 242.3 238 49.6
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.6e-62 241.9 218 54.6
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 4.6e-62 241.9 218 55.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 4.6e-62 241.9 221 52.0
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.0e-62 241.5 223 53.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.0e-62 241.5 218 53.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 6.0e-62 241.5 211 55.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 6.0e-62 241.5 239 51.5
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 7.8e-62 241.1 218 54.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.8e-62 241.1 205 56.1
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 7.8e-62 241.1 219 55.3
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.8e-62 241.1 213 53.5
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.8e-62 241.1 226 54.0
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 7.8e-62 241.1 220 52.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.0e-61 240.7 219 54.8
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.3e-61 240.4 214 53.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 2.3e-61 239.6 223 54.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.3e-61 239.6 230 52.6
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.0e-61 239.2 224 53.1
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.0e-61 239.2 219 53.0
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 3.9e-61 238.8 218 54.6
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 5.0e-61 238.4 218 54.6
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.1e-60 237.3 213 52.6
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.5e-60 236.1 218 53.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.5e-60 236.1 218 53.2
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.5e-60 236.1 209 53.6
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.5e-60 236.1 237 51.5
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.5e-60 236.1 246 49.6
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.3e-60 235.3 221 53.4
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 4.3e-60 235.3 222 53.2
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 4.3e-60 235.3 223 53.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.3e-60 235.3 218 54.6
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 9.5e-60 234.2 219 51.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.1e-59 233.0 231 51.9
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 2.1e-59 233.0 200 59.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.8e-59 232.6 207 54.6
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 4.7e-59 231.9 167 63.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 6.2e-59 231.5 252 46.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.1e-58 230.7 222 52.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.5e-57 226.9 228 49.1
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.4e-57 225.7 221 49.8
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.8e-57 224.9 231 48.9
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 9.8e-57 224.2 148 68.9
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 9.8e-57 224.2 231 48.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-57 224.2 231 48.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-57 224.2 231 48.5
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.3e-56 221.1 224 49.1
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.9e-55 219.9 148 67.6
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 7.1e-55 218.0 229 49.3
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.2e-54 217.2 267 46.1
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.7e-54 216.1 217 51.2
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.3e-53 213.8 194 55.7
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.9e-53 212.2 170 58.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.9e-52 209.9 264 44.3
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.2e-49 200.7 163 62.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 4.9e-48 195.3 127 73.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 1.1e-47 194.1 130 69.2
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-47 193.0 260 40.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.1e-47 192.2 213 50.2
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.1e-45 185.3 125 67.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.1e-44 184.1 130 63.8
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.2e-43 180.6 122 64.8
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.4e-42 177.2 166 54.2
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 5.2e-42 175.3 125 64.8
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.9e-41 171.0 124 59.7
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.3e-40 170.6 130 61.5
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 4.9e-40 168.7 146 54.8
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.8e-38 161.4 122 61.5
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.7e-37 160.2 134 56.0
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.1e-30 136.7 132 53.0
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.7e-29 131.7 239 35.6
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 9.6e-28 127.9 81 72.8
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.4e-26 123.2 81 66.7
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-20 104.0 82 63.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.3e-19 100.9 123 40.7
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.3e-19 100.9 223 28.3
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.8e-19 99.8 147 36.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 9.0e-18 94.7 79 57.0
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 5.8e-17 92.0 109 45.9
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 8.4e-16 88.2 121 37.2
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.0e-13 81.3 98 44.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 3.0e-13 79.7 80 52.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 5.1e-13 79.0 114 36.0
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 4.3e-12 75.9 124 32.3
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.6e-09 66.6 90 44.4
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.6e-09 65.1 87 42.5
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 2.9e-08 63.2 85 42.4
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 8.5e-08 61.6 87 42.5
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 2.5e-07 60.1 74 43.2
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 4.2e-07 59.3 56 46.4
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 1.6e-06 57.4 62 41.9


User provided reference genes

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