Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 4.9e-238 827.4 416 100.0
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.5e-170 603.2 397 72.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 6.3e-169 597.8 395 73.7
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.1e-168 597.0 414 70.3
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.4e-168 595.9 396 73.7
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.0e-167 592.8 414 69.6
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.0e-167 592.8 414 69.3
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 4.5e-167 591.7 395 72.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.0e-166 590.5 383 73.4
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.2e-166 589.3 413 69.5
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 3.8e-166 588.6 395 71.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 5.0e-166 588.2 414 69.6
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.1e-165 587.0 413 69.2
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.9e-165 586.3 383 72.8
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.5e-165 584.7 396 71.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 9.4e-165 583.9 420 67.4
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.2e-164 583.6 408 68.9
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.7e-164 582.4 395 70.1
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 6.1e-164 581.3 426 66.7
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 6.1e-164 581.3 413 68.8
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.8e-163 579.7 401 68.3
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 5.2e-163 578.2 415 66.7
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.2e-163 578.2 414 68.4
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 2.6e-162 575.9 395 71.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.4e-162 575.5 395 69.6
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.3e-161 573.5 395 70.1
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.7e-161 573.2 413 68.3
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.7e-161 573.2 395 71.1
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.2e-161 572.8 403 68.5
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.2e-161 572.8 398 69.8
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.7e-161 572.0 395 70.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 8.3e-161 570.9 395 69.6
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 8.3e-161 570.9 396 69.9
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 8.3e-161 570.9 413 67.6
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.4e-160 569.3 395 70.1
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.1e-160 568.9 424 67.0
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 5.4e-160 568.2 396 68.7
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.0e-160 567.8 396 69.7
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.2e-159 567.0 454 63.0
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.2e-159 567.0 424 65.8
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.0e-159 566.2 403 67.5
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 4.5e-159 565.1 396 68.9
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.7e-158 563.1 395 69.9
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.9e-158 562.4 416 66.3
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.9e-158 562.4 413 67.1
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.9e-158 562.4 423 65.7
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 5.0e-158 561.6 426 64.3
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.5e-158 561.2 425 66.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 6.5e-158 561.2 392 68.6
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.5e-158 561.2 406 67.2
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.5e-157 560.1 403 66.0
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-157 559.3 410 67.1
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.5e-157 559.3 402 68.7
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.2e-157 558.9 415 66.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.2e-157 558.5 396 68.4
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.6e-156 556.6 392 68.1
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.6e-156 556.6 392 68.9
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.7e-156 555.8 406 68.2
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.7e-156 555.8 413 65.9
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.7e-156 555.8 415 64.6
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 3.6e-156 555.4 412 66.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 6.1e-156 554.7 426 62.9
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.4e-155 553.5 425 62.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.8e-155 553.1 393 67.9
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.0e-155 552.4 425 62.8
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 4.0e-155 552.0 383 69.5
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 5.2e-155 551.6 425 62.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 5.2e-155 551.6 431 64.7
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.2e-154 550.4 417 65.9
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.5e-154 550.1 387 68.2
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.7e-153 546.6 402 65.9
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.8e-153 545.8 425 61.6
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.7e-153 545.4 457 61.1
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 6.3e-153 544.7 401 66.1
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.4e-152 543.5 413 63.0
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-152 543.1 413 63.0
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.7e-150 536.6 418 63.9
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.4e-147 526.9 413 62.0
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.8e-147 526.6 413 62.0
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 4.0e-147 525.4 421 63.7
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.0e-146 523.1 413 61.5
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.0e-146 523.1 413 61.5
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.7e-145 520.0 423 60.5
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.9e-145 518.5 427 60.7
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.2e-143 513.8 362 70.2
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 5.0e-142 508.4 356 69.1
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.1e-140 503.1 415 61.7
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 8.0e-140 501.1 357 67.8
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.2e-138 497.3 344 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 5.8e-138 495.0 394 60.7
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 9.8e-138 494.2 415 57.6
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.7e-137 493.4 542 50.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.9e-137 492.7 357 67.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 6.4e-137 491.5 417 59.7
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 9.2e-136 487.6 381 63.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.0e-134 482.6 330 70.3
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 5.2e-131 471.9 383 58.0
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 9.8e-130 467.6 359 65.2
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-127 460.7 329 65.3
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.1e-125 454.1 390 56.7
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 4.7e-124 448.7 393 58.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.2e-121 439.9 319 67.7
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 6.4e-113 411.8 400 55.2
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-112 411.0 334 61.1
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 6.6e-110 401.7 370 52.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 4.8e-108 395.6 299 65.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 2.0e-106 390.2 319 62.4
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.1e-104 384.4 253 73.1
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 2.4e-99 366.7 309 61.2
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.1e-96 357.8 276 62.3
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.7e-95 353.2 267 65.9
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 2.3e-94 350.1 327 53.2
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.5e-93 346.7 405 46.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 3.5e-87 326.2 373 45.0
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 6.0e-87 325.5 399 45.1
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 7.9e-87 325.1 228 69.3
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 3.3e-61 240.0 170 65.3
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.0e-54 218.4 269 43.5
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.6e-53 213.8 251 49.8
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.4e-51 208.0 129 72.9
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.0e-49 201.8 122 77.0
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-44 183.3 167 56.3
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.7e-44 183.3 343 31.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 7.0e-43 179.1 154 57.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.8e-41 173.3 171 55.0
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.5e-29 134.8 415 29.2
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.4e-29 133.7 142 52.8
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.1e-23 114.4 84 59.5
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.1e-22 110.5 96 58.3
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.4e-21 107.1 139 48.2
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.6e-18 98.2 64 67.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.5e-16 91.7 93 51.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.8e-14 84.7 83 50.6
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.6e-13 80.9 75 53.3
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 9.9e-13 79.0 49 69.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.5e-10 70.5 76 46.1
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 8.1e-07 59.3 43 62.8
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 4.0e-06 57.0 44 61.4


User provided reference genes

Program Settings