Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 4.5e-138 494.6 249 100.0
CDE03G0128 Ceratophyllum demersum HOM05D000100 ORTHO05D000052 5.4e-59 231.9 185 73.5
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 5.7e-24 115.5 78 73.1
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 6.5e-20 102.1 71 69.0
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 1.4e-19 100.9 71 67.6
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.4e-19 100.9 71 70.4
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 1.9e-19 100.5 71 70.4
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.5e-19 100.1 71 69.0
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 3.2e-19 99.8 71 69.0
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 4.2e-19 99.4 71 67.6
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 7.2e-19 98.6 71 69.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 7.2e-19 98.6 71 69.0
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 7.2e-19 98.6 71 67.6
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 7.2e-19 98.6 71 67.6
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.2e-18 97.8 71 67.6
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.6e-18 97.4 71 67.6
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.6e-18 97.4 71 67.6
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.6e-18 97.4 71 66.2
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 2.1e-18 97.1 71 66.2
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 2.1e-18 97.1 71 66.2
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.1e-18 97.1 71 67.6
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.1e-18 97.1 71 66.2
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 2.7e-18 96.7 71 66.2
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 3.6e-18 96.3 71 66.2
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.6e-18 96.3 71 66.2
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 3.6e-18 96.3 71 63.4
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 3.6e-18 96.3 71 66.2
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 4.7e-18 95.9 71 64.8
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 4.7e-18 95.9 71 63.4
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 4.7e-18 95.9 71 63.4
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 6.1e-18 95.5 71 63.4
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 6.1e-18 95.5 71 67.6
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 8.0e-18 95.1 71 63.4
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 8.0e-18 95.1 71 64.8
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.0e-17 94.7 71 66.2
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.0e-17 94.7 71 60.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.4e-17 94.4 71 64.8
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.4e-17 94.4 71 64.8
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 1.4e-17 94.4 71 64.8
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.8e-17 94.0 71 64.8
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.8e-17 94.0 71 63.4
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 2.3e-17 93.6 71 62.0
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 3.0e-17 93.2 71 63.4
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 3.0e-17 93.2 71 60.6
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 3.0e-17 93.2 71 63.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 3.0e-17 93.2 71 62.0
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 3.0e-17 93.2 71 64.8
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.9e-17 92.8 71 62.0
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 5.2e-17 92.4 71 60.6
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 5.2e-17 92.4 71 60.6
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 5.2e-17 92.4 71 62.0
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.2e-17 92.4 71 60.6
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.2e-17 92.4 71 60.6
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 6.7e-17 92.0 71 57.7
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 6.7e-17 92.0 71 57.7
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 6.7e-17 92.0 71 60.6
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 6.7e-17 92.0 71 60.6
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 6.7e-17 92.0 69 65.2
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.1e-16 91.3 71 62.0
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.1e-16 91.3 78 61.5
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.1e-16 91.3 71 63.4
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.1e-16 91.3 71 62.0
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.1e-16 91.3 71 62.0
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 57.7
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 59.2
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 62.0
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 62.0
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.5e-16 90.9 71 60.6
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.0e-16 90.5 71 62.0
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 2.6e-16 90.1 81 59.3
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 2.6e-16 90.1 71 62.0
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 3.3e-16 89.7 71 59.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 3.3e-16 89.7 71 59.2
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 3.3e-16 89.7 71 59.2
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.3e-16 89.7 71 59.2
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 4.4e-16 89.4 71 60.6
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 4.4e-16 89.4 71 59.2
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 7.4e-16 88.6 71 56.3
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 7.4e-16 88.6 71 59.2
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 7.4e-16 88.6 71 59.2
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 7.4e-16 88.6 69 62.3
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.4e-16 88.6 71 57.7
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.4e-16 88.6 71 57.7
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 9.7e-16 88.2 71 57.7
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 9.7e-16 88.2 71 57.7
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 9.7e-16 88.2 71 57.7
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 9.7e-16 88.2 71 57.7
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 9.7e-16 88.2 71 57.7
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 1.7e-15 87.4 71 59.2
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.7e-15 87.4 68 58.8
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.7e-15 87.4 71 59.2
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.2e-15 87.0 71 59.2
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 3.7e-15 86.3 71 56.3
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 8.2e-15 85.1 71 57.7
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 4.1e-14 82.8 86 50.0
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 5.3e-14 82.4 71 54.9
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 9.1e-14 81.6 71 56.3
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 9.1e-14 81.6 71 56.3
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.2e-13 81.3 99 47.5
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.6e-13 80.9 87 50.6
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.3e-12 77.8 93 47.3
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.7e-12 77.4 71 54.9
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 3.8e-12 76.3 71 54.9
Nn7g37309 Nelumbo nucifera HOM05D001976 ORTHO05D001960 2.5e-11 73.6 195 35.9
TAR374G0991 Trochodendron aralioides HOM05D001976 ORTHO05D001960 7.2e-11 72.0 201 36.3
TAR636G0380 Trochodendron aralioides HOM05D001976 ORTHO05D001960 3.6e-10 69.7 196 36.2
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.7e-10 69.3 53 62.3
Sabra15G0022800 Salix brachista HOM05D001976 ORTHO05D001960 1.0e-09 68.2 180 35.6
Potri.012G035700 Populus trichocarpa HOM05D001976 ORTHO05D001960 1.4e-09 67.8 178 36.0
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 2.3e-09 67.0 68 48.5
Sabra12G0024400 Salix brachista HOM05D001976 ORTHO05D001960 3.0e-09 66.6 209 33.0
Dinv37579 Davidia involucrata HOM05D001976 ORTHO05D001960 8.8e-09 65.1 217 30.9
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.5e-08 64.3 44 63.6
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 2.0e-08 63.9 65 53.8
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.0e-08 63.9 61 49.2
PGSC0003DMG400012175 Solanum tuberosum HOM05D001976 ORTHO05D001960 2.6e-08 63.5 195 34.9
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 3.3e-08 63.2 44 61.4
CSS0015961 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 4.4e-08 62.8 204 32.8
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 4.4e-08 62.8 44 65.9
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 5.7e-08 62.4 44 63.6
CSS0011463 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 1.3e-07 61.2 207 32.9
CDE10G1305 Ceratophyllum demersum HOM05D001976 ORTHO05D001960 1.3e-07 61.2 228 31.1
Potri.015G027500 Populus trichocarpa HOM05D001976 ORTHO05D001960 1.3e-07 61.2 206 33.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.7e-07 60.8 43 62.8
CSS0020510 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 2.2e-07 60.5 168 35.1
FAN04G0634 Fragaria x ananassa HOM05D001976 ORTHO05D001960 2.2e-07 60.5 176 34.7
Lj4g0026616 Lotus japonicus HOM05D001976 ORTHO05D001960 2.2e-07 60.5 187 33.7
FAN13G0870 Fragaria x ananassa HOM05D001976 ORTHO05D001960 3.7e-07 59.7 176 34.7
FAN13G2994 Fragaria x ananassa HOM05D001976 ORTHO05D001960 3.7e-07 59.7 176 34.7
Manes.06G154200 Manihot esculenta HOM05D001976 ORTHO05D001960 3.7e-07 59.7 163 38.7
TAR629G3496 Trochodendron aralioides HOM05D001976 ORTHO05D001960 3.7e-07 59.7 231 30.7
Ciclev10020100m.g Citrus clementina HOM05D001976 ORTHO05D001960 4.8e-07 59.3 193 34.2
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 4.8e-07 59.3 50 52.0
Duzib205G1380 Durio zibethinus HOM05D001976 ORTHO05D001960 4.8e-07 59.3 185 35.7
Gorai.008G250800 Gossypium raimondii HOM05D001976 ORTHO05D001960 4.8e-07 59.3 211 32.2
Hma1.2p1_0216F.1_g091200 Hydrangea macrophylla HOM05D001976 ORTHO05D001960 4.8e-07 59.3 192 32.3
FAN04G1876 Fragaria x ananassa HOM05D001976 ORTHO05D001960 6.3e-07 58.9 176 34.1
Gohir.A12G232900 Gossypium hirsutum HOM05D001976 ORTHO05D001960 6.3e-07 58.9 178 34.8
Solyc08g081710.3 Solanum lycopersicum HOM05D001976 ORTHO05D001960 6.3e-07 58.9 198 32.3
Thecc.03G288300 Theobroma cacao HOM05D001976 ORTHO05D001960 6.3e-07 58.9 185 33.5
TWI81G0614 Tripterygium wilfordii HOM05D001976 ORTHO05D001960 6.3e-07 58.9 213 31.0
Dinv35286 Davidia involucrata HOM05D001976 ORTHO05D001960 1.4e-06 57.8 167 37.1
Sopen08g030010 Solanum pennellii HOM05D001976 ORTHO05D001960 1.8e-06 57.4 187 31.6
PSO170G5045 Papaver somniferum HOM05D001976 ORTHO05D001960 2.4e-06 57.0 187 33.2
Manes.14G020600 Manihot esculenta HOM05D001976 ORTHO05D001960 3.1e-06 56.6 160 34.4
Nn1g01713 Nelumbo nucifera HOM05D001976 ORTHO05D001960 3.1e-06 56.6 197 33.0
Sabra01G0073300 Salix brachista HOM05D001976 ORTHO05D001960 3.1e-06 56.6 208 32.2
MSTRG.11949 Avicennia marina HOM05D001976 ORTHO05D001960 4.1e-06 56.2 192 33.3
Gohir.D12G234501 Gossypium hirsutum HOM05D001976 ORTHO05D001960 4.1e-06 56.2 211 31.8
Psat6g195400 Pisum sativum HOM05D001976 ORTHO05D001960 5.3e-06 55.8 144 36.1
FAN08G2781 Fragaria x ananassa HOM05D001976 ORTHO05D001960 7.0e-06 55.5 176 35.8
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 9.1e-06 55.1 44 54.5
Dinv28365 Davidia involucrata HOM05D001976 ORTHO05D001960 9.1e-06 55.1 167 35.3
Duzib068G0824 Durio zibethinus HOM05D001976 ORTHO05D001960 9.1e-06 55.1 191 34.0


User provided reference genes

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