Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 0.0e+00 1261.1 660 100.0
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.7e-264 916.0 631 80.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.4e-247 859.8 631 72.4
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 4.1e-247 858.2 632 72.2
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.3e-242 842.4 621 70.9
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 2.0e-241 839.3 632 70.4
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 4.6e-238 828.2 653 67.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 5.2e-234 814.7 631 68.6
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 8.9e-234 813.9 634 68.5
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 8.9e-234 813.9 631 68.8
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 4.4e-233 811.6 641 67.2
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 5.8e-233 811.2 636 68.2
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 2.7e-230 802.4 643 66.7
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.5e-230 802.0 633 67.0
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 4.6e-230 801.6 631 68.0
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.3e-229 799.3 636 67.3
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.3e-229 799.3 648 65.6
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.6e-229 797.7 637 66.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.3e-228 795.4 643 66.3
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 9.5e-228 793.9 635 66.0
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.6e-227 793.1 641 66.6
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.8e-227 792.3 631 67.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.8e-226 789.6 636 67.3
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 3.1e-226 788.9 643 65.6
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 6.8e-226 787.7 634 66.6
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 6.8e-226 787.7 632 66.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 8.9e-226 787.3 642 66.4
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 2.6e-225 785.8 632 66.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.3e-224 783.5 643 65.2
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.1e-223 780.4 642 65.1
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.4e-223 780.0 642 65.7
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.4e-223 779.2 636 65.4
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.4e-223 779.2 636 65.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.5e-222 775.4 640 64.7
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.5e-222 775.4 644 64.6
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 6.0e-222 774.6 630 66.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 6.0e-222 774.6 636 65.9
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 7.8e-222 774.2 628 66.6
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.3e-221 773.5 633 65.4
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 3.9e-221 771.9 636 64.9
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.1e-221 771.5 644 64.4
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.6e-221 770.8 635 63.1
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.5e-220 770.0 645 64.5
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 3.3e-220 768.8 646 63.9
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.6e-219 766.5 655 63.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.8e-219 765.8 651 63.4
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.8e-219 765.8 655 63.5
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 2.8e-219 765.8 631 64.8
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 4.7e-219 765.0 635 64.7
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.1e-218 763.8 647 63.5
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.8e-218 763.1 654 63.1
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 6.8e-218 761.1 631 66.4
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 6.8e-218 761.1 636 64.9
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 8.9e-218 760.8 641 64.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.2e-217 760.4 632 64.7
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 3.4e-217 758.8 640 63.6
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.4e-217 758.8 645 63.4
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 7.6e-217 757.7 644 63.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 3.8e-216 755.4 649 63.6
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.4e-216 754.6 589 68.4
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 8.4e-216 754.2 629 64.7
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.4e-216 754.2 644 63.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-215 753.8 646 62.8
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.4e-215 753.4 655 62.6
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.4e-215 752.7 646 62.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.2e-214 750.4 640 63.1
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.2e-214 750.4 638 62.7
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.0e-213 747.3 638 62.5
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.3e-213 746.1 648 62.2
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 5.1e-213 745.0 641 62.4
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 6.6e-213 744.6 638 62.2
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 8.6e-213 744.2 647 62.3
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.1e-212 743.8 641 63.0
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.5e-212 742.7 644 62.9
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 3.3e-212 742.3 650 61.8
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.3e-212 742.3 642 62.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 4.3e-212 741.9 645 62.3
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 2.1e-211 739.6 652 61.8
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 2.1e-211 739.6 659 60.7
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.8e-211 739.2 640 62.5
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 8.1e-211 737.6 633 61.8
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 4.0e-210 735.3 639 62.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 8.9e-210 734.2 649 60.9
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.2e-209 733.8 656 61.1
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.5e-209 733.4 639 63.1
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.6e-209 732.6 654 61.0
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.6e-209 732.6 651 60.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 3.4e-209 732.3 653 61.1
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 5.8e-209 731.5 652 61.7
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 7.6e-209 731.1 651 61.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 7.6e-209 731.1 632 62.7
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 9.9e-209 730.7 651 61.6
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.3e-208 730.3 639 61.2
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.3e-208 730.3 640 61.1
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.7e-208 729.9 655 60.8
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 2.9e-208 729.2 651 61.6
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.9e-208 729.2 654 61.3
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 8.4e-208 727.6 653 61.3
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 4.2e-207 725.3 650 60.8
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.2e-206 723.8 653 60.6
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.7e-206 722.6 645 60.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.5e-204 716.8 645 60.9
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.3e-203 713.8 646 61.1
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 5.3e-202 708.4 653 59.9
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 6.9e-202 708.0 578 65.2
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 4.9e-200 701.8 645 60.5
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 6.4e-200 701.4 644 60.4
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.6e-196 688.3 637 60.4
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.4e-196 688.0 642 59.0
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 3.1e-194 682.6 642 58.3
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 5.3e-194 681.8 643 59.3
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.0e-189 667.5 647 57.7
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.8e-189 666.8 622 59.5
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 5.1e-189 665.2 591 62.3
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.7e-184 650.2 538 65.6
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 9.7e-180 634.4 633 55.6
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.8e-176 622.5 633 55.8
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.1e-174 615.1 589 60.3
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.4e-159 564.7 548 58.4
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 8.2e-147 525.0 650 48.5
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-146 524.2 619 51.9
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.4e-141 507.7 659 46.7
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 3.7e-131 473.0 648 45.8
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-127 461.5 620 47.6
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.1e-101 375.2 324 63.3
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 7.1e-98 362.5 397 52.1
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.9e-91 339.7 341 55.7
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 3.5e-73 280.4 229 63.3
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.9e-71 274.6 299 52.8
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 2.9e-43 181.0 548 30.3
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.6e-36 158.7 118 68.6
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.1e-29 134.4 118 53.4
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.5e-23 115.5 112 53.6
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.7e-19 102.1 198 40.9
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.2e-12 79.3 78 51.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.5e-10 72.4 91 51.6
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 3.6e-09 67.8 41 70.7


User provided reference genes

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