Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 0.0e+00 1502.3 789 100.0
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.9e-211 740.0 796 58.0
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.1e-150 538.1 861 44.0
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.6e-150 535.8 853 44.3
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.0e-147 527.3 860 42.7
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 5.8e-147 525.8 813 43.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.3e-143 513.8 843 42.6
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.6e-143 511.9 858 42.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.1e-142 511.5 842 42.6
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.6e-141 507.7 834 42.1
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.1e-141 507.3 867 42.2
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.4e-140 504.6 787 44.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.5e-139 501.1 886 41.1
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.0e-139 500.7 881 41.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 4.4e-139 499.6 893 40.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.9e-138 496.1 855 41.9
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.6e-136 489.6 757 43.9
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 5.1e-135 486.1 785 42.2
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 3.3e-134 483.4 838 42.6
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.8e-132 477.6 882 40.8
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.2e-131 474.9 819 41.4
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 5.8e-131 472.6 862 40.6
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 2.2e-130 470.7 817 41.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.8e-130 469.9 786 42.4
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 3.2e-129 466.8 815 40.9
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 4.2e-129 466.5 875 39.2
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 4.2e-129 466.5 852 40.6
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-128 464.5 815 40.7
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 3.5e-128 463.4 785 42.5
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.3e-127 461.5 814 41.2
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.1e-127 459.5 846 40.5
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.1e-126 458.4 842 41.0
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.8e-125 453.0 830 40.1
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-124 451.4 788 41.5
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.4e-124 450.7 855 39.9
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 3.1e-124 450.3 814 40.7
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.0e-123 447.6 788 40.7
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 4.5e-123 446.4 869 38.8
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 7.6e-123 445.7 844 39.7
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 7.6e-123 445.7 845 39.4
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.3e-122 444.9 830 39.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 6.4e-122 442.6 853 38.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-121 441.8 832 39.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.1e-120 437.6 820 40.1
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 3.5e-120 436.8 847 38.3
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 4.6e-120 436.4 780 40.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 7.9e-120 435.6 844 38.4
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.1e-118 431.8 799 39.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.1e-118 431.8 833 39.7
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.5e-118 431.4 785 39.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.9e-118 431.0 824 40.8
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.5e-118 430.6 793 38.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 9.6e-118 428.7 803 39.0
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 3.7e-117 426.8 859 37.7
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 4.8e-117 426.4 785 40.3
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-116 424.9 801 38.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-116 424.9 821 38.5
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.8e-116 424.5 897 37.0
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.4e-116 424.1 794 39.5
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.1e-116 423.7 861 38.3
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 9.0e-116 422.2 838 39.4
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.0e-115 421.0 859 38.1
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.8e-115 419.5 830 38.2
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 5.8e-115 419.5 814 39.4
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.7e-114 417.9 806 39.0
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.9e-114 417.2 817 38.6
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.9e-114 416.4 788 37.9
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-113 414.8 826 38.4
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 4.2e-113 413.3 829 38.2
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.1e-113 412.5 768 40.6
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 7.1e-113 412.5 770 38.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 9.3e-113 412.1 831 36.8
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 6.0e-112 409.5 839 37.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-110 405.2 764 39.1
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.9e-110 404.4 812 38.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.3e-110 403.3 822 38.1
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 4.3e-110 403.3 793 39.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 7.4e-110 402.5 724 39.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.6e-109 401.4 742 39.9
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.1e-109 401.0 747 40.0
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 2.1e-109 401.0 798 39.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.8e-109 400.6 738 40.1
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.7e-109 400.2 814 38.3
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 8.2e-109 399.1 808 37.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.4e-108 398.3 807 37.9
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.8e-108 397.9 755 38.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.1e-108 397.1 808 38.0
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.0e-108 396.7 809 37.5
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 4.0e-108 396.7 830 38.1
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.2e-107 395.2 796 37.3
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.6e-107 394.0 741 39.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 4.5e-107 393.3 706 40.1
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 8.4e-106 389.0 795 37.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.9e-105 387.9 820 36.2
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.5e-105 387.5 902 36.7
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 5.5e-105 386.3 796 38.1
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 5.5e-105 386.3 793 37.6
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-104 384.0 764 40.7
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 7.9e-104 382.5 796 37.4
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.8e-103 381.3 842 36.6
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.9e-103 380.2 780 38.1
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.9e-102 377.9 837 36.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 3.3e-102 377.1 793 37.1
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.7e-101 373.6 743 38.6
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.3e-100 369.8 854 37.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.4e-99 367.1 819 36.4
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-99 366.7 818 36.6
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.0e-98 365.5 772 37.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 6.5e-98 362.8 829 35.7
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.4e-97 361.7 621 40.7
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.5e-97 360.9 701 38.2
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 7.2e-97 359.4 809 35.8
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.1e-96 357.8 819 36.0
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 2.0e-94 351.3 712 37.9
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.3e-93 348.6 770 36.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 9.1e-92 342.4 668 39.2
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.5e-91 341.7 657 39.0
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.5e-89 334.3 807 35.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.2e-89 332.8 730 37.4
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 9.4e-89 332.4 697 37.0
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 4.7e-88 330.1 701 36.4
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.5e-86 325.1 707 37.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.6e-86 324.3 710 37.2
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.6e-80 305.1 763 34.2
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 4.7e-80 303.5 618 37.9
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.3e-77 295.4 708 34.7
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.2e-72 278.9 639 35.8
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-71 275.0 685 33.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.3e-71 274.6 686 34.5
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.1e-68 263.8 699 34.6
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.2e-67 262.3 691 33.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-66 258.5 690 32.6
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.2e-66 258.1 691 32.9
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 5.2e-63 246.9 599 34.1
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 8.8e-63 246.1 394 41.1
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.8e-61 241.1 312 48.4
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.8e-61 241.1 312 48.4
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.9e-58 231.1 742 30.3
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.3e-57 227.6 779 29.4
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 3.0e-55 221.1 925 27.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 4.5e-51 207.2 616 31.0
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 9.2e-44 183.0 684 28.1
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 8.0e-40 169.9 356 34.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 3.4e-38 164.5 694 28.7
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 7.8e-35 153.3 294 41.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 3.9e-34 151.0 456 32.0
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-28 132.9 149 49.7
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 5.4e-28 130.6 149 49.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.7e-27 128.3 163 49.7
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 5.1e-26 124.0 109 62.4
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.5e-25 122.5 357 31.4
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.6e-24 117.9 223 36.3
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 5.8e-22 110.5 151 45.0
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 7.6e-22 110.2 173 39.9
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 9.6e-17 93.2 135 42.2
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.6e-16 92.4 79 60.8
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.0e-15 87.8 133 44.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.6e-11 75.9 393 26.7
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.1e-11 75.5 98 45.9
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.1e-09 69.7 136 37.5
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.5e-09 69.3 102 42.2
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 4.3e-09 67.8 102 41.2
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.8e-07 62.4 130 37.7


User provided reference genes

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