Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 0.0e+00 1246.1 628 100.0
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 5.0e-101 372.9 727 38.5
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 3.0e-98 363.6 662 39.9
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 2.2e-96 357.5 924 32.8
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 1.6e-83 314.7 533 41.5
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 3.6e-83 313.5 651 35.9
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 5.2e-82 309.7 430 45.1
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 3.8e-77 293.5 344 48.5
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 1.0e-74 285.4 348 49.1
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 3.0e-74 283.9 405 43.7
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 3.0e-74 283.9 397 45.6
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 4.4e-73 280.0 350 48.6
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 9.8e-73 278.9 861 30.2
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 1.3e-72 278.5 791 30.6
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 2.8e-72 277.3 513 37.0
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 3.2e-71 273.9 410 44.1
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 1.2e-70 271.9 343 48.4
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.5e-70 270.0 834 28.9
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 2.9e-69 267.3 410 43.7
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 3.9e-69 266.9 354 46.3
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 1.5e-68 265.0 835 29.5
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.5e-68 264.2 806 29.9
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 4.3e-68 263.5 490 38.0
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 7.3e-68 262.7 825 29.6
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 9.5e-68 262.3 401 42.1
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 2.1e-67 261.2 349 45.3
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 2.8e-67 260.8 352 45.5
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 6.1e-67 259.6 339 46.0
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 4.0e-66 256.9 483 37.5
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 5.2e-66 256.5 356 45.2
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 8.9e-66 255.8 305 47.2
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 2.0e-65 254.6 391 43.7
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 2.6e-65 254.2 411 42.3
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 5.8e-65 253.1 421 41.1
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.3e-64 251.9 816 31.9
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 1.7e-64 251.5 484 36.8
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 4.9e-64 250.0 245 53.9
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 8.3e-64 249.2 816 31.4
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.1e-63 248.8 338 46.2
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 4.1e-63 246.9 368 41.6
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 9.2e-63 245.7 414 40.3
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.6e-62 245.0 343 45.8
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.6e-62 245.0 397 41.8
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 1.6e-62 245.0 816 28.1
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 2.0e-62 244.6 746 31.1
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 3.5e-62 243.8 408 41.7
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.6e-62 243.4 397 42.3
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 6.0e-62 243.0 424 38.7
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 7.8e-62 242.7 433 39.5
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.3e-61 241.9 338 46.2
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.9e-61 240.4 315 47.0
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 5.0e-61 240.0 343 45.2
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 8.6e-61 239.2 316 47.8
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.1e-60 238.8 339 43.4
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 2.5e-60 237.7 410 40.2
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 2.5e-60 237.7 390 38.7
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 4.3e-60 236.9 299 46.8
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 4.3e-60 236.9 421 38.5
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 1.6e-59 235.0 712 29.5
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.8e-59 234.2 338 45.3
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.6e-59 233.8 341 42.8
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 4.7e-59 233.4 433 38.6
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 4.7e-59 233.4 320 45.3
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 6.2e-59 233.0 299 46.5
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 6.2e-59 233.0 382 40.8
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.4e-58 231.9 397 39.8
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 2.3e-58 231.1 406 40.1
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 2.3e-58 231.1 397 39.8
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 4.0e-58 230.3 301 46.5
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 5.2e-58 229.9 432 38.7
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.5e-57 228.4 356 43.0
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 9.8e-57 225.7 759 28.9
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 4.9e-56 223.4 339 39.8
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 6.4e-56 223.0 360 41.1
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 6.4e-56 223.0 532 35.2
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 1.9e-55 221.5 386 40.4
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 3.5e-54 217.2 463 35.0
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 6.0e-54 216.5 388 39.7
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 6.0e-54 216.5 429 37.3
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 1.3e-53 215.3 392 37.2
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 1.9e-52 211.5 649 28.8
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 2.5e-52 211.1 436 36.5
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 4.3e-52 210.3 410 38.0
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 7.3e-52 209.5 823 28.2
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.2e-51 208.8 460 36.3
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 1.2e-51 208.8 409 36.2
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 3.6e-51 207.2 395 37.5
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 6.2e-51 206.5 325 41.2
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 8.1e-51 206.1 649 28.7
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 2.3e-50 204.5 322 41.0
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 2.3e-50 204.5 246 46.7
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 3.4e-49 200.7 331 41.4
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 5.8e-49 199.9 329 39.8
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 9.9e-49 199.1 317 39.1
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 1.7e-48 198.4 594 29.5
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 2.2e-48 198.0 400 37.0
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 3.7e-48 197.2 361 38.2
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.1e-47 195.7 117 83.8
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 7.1e-47 193.0 324 38.6
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 2.1e-46 191.4 321 41.7
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 2.7e-46 191.0 353 38.2
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 4.6e-46 190.3 334 38.9
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 4.6e-46 190.3 332 41.0
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 6.0e-46 189.9 672 27.5
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.0e-45 189.1 155 61.9
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 3.0e-45 187.6 332 40.7
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 3.9e-45 187.2 327 38.2
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 6.6e-45 186.4 331 40.5
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 6.6e-45 186.4 340 39.1
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 1.1e-44 185.7 334 38.9
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 1.5e-44 185.3 336 39.6
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 1.5e-44 185.3 336 39.6
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 4.3e-44 183.7 469 33.9
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 4.3e-44 183.7 618 29.3
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 1.6e-43 181.8 206 48.5
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 6.2e-43 179.9 424 32.8
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 1.1e-42 179.1 587 28.1
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 1.2e-41 175.6 358 36.0
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 2.2e-40 171.4 665 24.8
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.8e-40 170.6 200 46.0
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 2.1e-38 164.9 725 25.2
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.0e-37 162.5 721 28.2
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 3.9e-37 160.6 200 44.5
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 1.9e-36 158.3 329 33.4
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 1.9e-36 158.3 274 37.6
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 2.8e-35 154.5 206 39.8
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 6.9e-34 149.8 247 38.1
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 6.9e-34 149.8 418 29.9
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.2e-33 149.1 403 34.5
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 2.0e-33 148.3 254 36.6
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 2.0e-33 148.3 254 36.6
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 2.0e-33 148.3 415 30.4
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 2.6e-33 147.9 268 35.4
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 4.9e-32 143.7 245 36.3
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.9e-29 134.0 358 32.1
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 3.3e-28 131.0 248 37.9
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 4.3e-28 130.6 245 33.1
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 1.2e-25 122.5 208 36.5
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.5e-25 122.1 590 25.4
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 4.5e-25 120.6 429 26.6
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 4.8e-19 100.5 197 33.5
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 8.1e-19 99.8 147 45.6
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 2.4e-18 98.2 153 37.3
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 8.4e-16 89.7 99 47.5
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.4e-15 89.0 380 26.8
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 3.5e-14 84.3 379 24.0
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 1.9e-12 78.6 72 48.6
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.8e-11 74.7 150 34.7
PGR044G2736 Punica granatum HOM05D000582 ORTHO05D000456 2.4e-10 71.6 65 50.8
Lalb_Chr24g0401081 Lupinus albus HOM05D004393 ORTHO05D004897 3.2e-07 61.2 84 33.3
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 7.2e-07 60.1 129 30.2


User provided reference genes

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