Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 7.8e-106 387.1 191 100.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.7e-76 289.7 181 75.7
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.4e-75 286.6 188 71.8
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.9e-75 286.2 180 75.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.6e-74 283.1 182 74.2
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 7.8e-74 280.8 184 75.5
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.3e-72 275.4 182 73.6
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 3.3e-72 275.4 186 69.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.4e-70 269.2 186 68.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 7.6e-69 264.2 186 67.2
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 67.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.4e-67 259.2 180 68.9
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.5e-66 255.4 180 67.8
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 3.0e-65 252.3 180 66.7
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 3.0e-65 252.3 188 65.4
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.9e-65 251.9 180 68.3
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 5.1e-65 251.5 180 67.2
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.1e-64 250.4 182 64.8
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.9e-64 249.6 182 66.5
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.5e-64 249.2 182 67.0
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 9.6e-64 247.3 182 66.5
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.6e-63 246.5 181 64.1
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.1e-63 246.1 180 65.6
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.8e-63 245.7 181 64.6
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.8e-63 245.7 181 64.6
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.8e-63 245.7 181 64.6
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.6e-63 245.4 180 65.6
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 3.6e-63 245.4 180 66.1
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 6.2e-63 244.6 182 65.9
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 6.2e-63 244.6 182 64.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.2e-63 244.6 181 64.1
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 6.2e-63 244.6 180 63.9
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.4e-62 243.4 180 66.7
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.8e-62 243.0 182 64.8
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.8e-62 243.0 182 65.9
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.4e-62 242.7 182 65.9
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 2.4e-62 242.7 182 65.9
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.4e-62 242.7 182 65.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 3.1e-62 242.3 180 63.9
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 3.1e-62 242.3 184 65.2
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 6.9e-62 241.1 184 61.4
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.9e-62 241.1 182 65.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 6.9e-62 241.1 182 64.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 9.0e-62 240.7 181 65.7
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 9.0e-62 240.7 182 63.2
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 9.0e-62 240.7 180 64.4
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.5e-61 240.0 186 62.9
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.5e-61 240.0 182 62.6
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 3.4e-61 238.8 182 63.7
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.4e-61 238.8 146 77.4
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 9.9e-61 237.3 181 64.6
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 9.9e-61 237.3 180 65.6
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 1.3e-60 236.9 182 63.2
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.3e-60 236.9 180 63.3
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.3e-60 236.9 180 63.3
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.7e-60 236.5 182 62.6
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.7e-60 236.5 180 64.4
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.7e-60 236.5 186 61.8
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.2e-60 236.1 180 65.0
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.2e-60 236.1 188 62.2
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.9e-60 235.7 186 61.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.9e-60 235.7 182 63.7
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 3.8e-60 235.3 182 64.8
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 6.4e-60 234.6 182 62.1
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 8.4e-60 234.2 182 63.2
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.1e-59 233.8 168 66.1
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 3.2e-59 232.3 182 62.6
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.2e-59 232.3 180 63.3
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 4.2e-59 231.9 186 61.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 4.2e-59 231.9 175 63.4
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.5e-59 231.5 182 62.1
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 5.5e-59 231.5 185 61.1
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 7.1e-59 231.1 186 61.3
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.1e-59 231.1 182 62.6
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.1e-59 231.1 182 61.0
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 9.3e-59 230.7 180 63.9
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 9.3e-59 230.7 180 64.4
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-58 230.3 181 63.0
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.2e-58 230.3 182 63.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.2e-58 230.3 182 61.5
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.6e-58 229.9 182 61.0
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 2.1e-58 229.6 181 61.9
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 6.0e-58 228.0 182 60.4
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 6.0e-58 228.0 182 60.4
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 6.0e-58 228.0 181 62.4
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.0e-57 227.3 182 59.9
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.3e-57 226.9 184 60.3
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.8e-57 226.5 182 61.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 6.7e-57 224.6 182 59.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.1e-56 223.8 182 58.8
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-56 223.8 180 61.7
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.1e-56 223.8 184 59.8
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.5e-56 222.6 180 61.1
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.5e-56 222.6 180 58.3
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.3e-56 222.2 182 61.0
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.3e-56 222.2 182 60.4
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.3e-56 222.2 182 60.4
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 5.6e-56 221.5 180 57.8
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.3e-55 220.3 180 60.6
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 2.8e-55 219.2 182 54.4
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 4.8e-55 218.4 167 64.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 8.1e-55 217.6 203 56.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.1e-54 215.7 180 60.0
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 6.9e-54 214.5 182 57.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 6.9e-54 214.5 166 65.1
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.5e-53 213.4 180 58.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.5e-53 213.4 180 58.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.0e-52 210.7 180 54.4
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.3e-52 210.3 180 58.9
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.9e-52 209.1 179 55.9
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.1e-51 207.2 180 53.3
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.0e-49 199.1 172 58.7
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.3e-48 195.3 187 51.9
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 5.7e-48 194.9 185 50.8
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 9.6e-48 194.1 146 66.4
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.3e-47 191.4 182 56.0
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 6.3e-47 191.4 198 52.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 5.3e-46 188.3 145 63.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.5e-45 186.8 145 61.4
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.6e-45 186.0 163 57.7
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 7.9e-42 174.5 181 52.5
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 3.9e-41 172.2 201 50.2
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.3e-39 167.2 163 57.7
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.6e-39 166.8 184 42.9
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.3e-39 164.9 180 49.4
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.4e-38 162.9 180 53.9
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.6e-34 150.2 112 59.8
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-34 150.2 145 55.2
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 6.7e-33 144.8 101 64.4
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.6e-29 132.9 117 56.4
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.2e-28 129.8 101 58.4
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 8.5e-28 127.9 160 45.6
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.4e-22 110.5 95 61.1
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.4e-22 110.5 188 31.4
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.5e-19 99.8 164 34.1
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 3.6e-18 95.9 135 40.0
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 4.4e-16 89.0 69 60.9
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 6.3e-15 85.1 62 64.5
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 6.5e-12 75.1 139 32.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 3.2e-11 72.8 81 50.6
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 4.7e-10 68.9 70 47.1


User provided reference genes

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