Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 0.0e+00 1375.9 708 100.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 5.5e-298 1027.3 718 75.9
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.8e-286 988.4 720 73.1
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 4.8e-278 961.1 717 71.3
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 8.2e-278 960.3 717 72.1
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.2e-274 948.3 716 71.1
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 4.0e-272 941.4 719 70.5
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 4.1e-269 931.4 717 69.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 9.1e-269 930.2 716 70.5
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 2.2e-267 925.6 710 69.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 2.9e-267 925.2 711 69.3
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 6.5e-267 924.1 717 69.6
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 8.5e-267 923.7 717 69.2
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 1.5e-266 922.9 711 69.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 3.2e-266 921.8 715 69.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 4.2e-266 921.4 714 69.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 5.5e-266 921.0 719 69.0
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 7.2e-266 920.6 713 68.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 4.7e-265 917.9 714 68.8
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.3e-264 915.6 715 69.1
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 3.0e-264 915.2 721 68.4
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 5.2e-264 914.4 715 69.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 6.8e-264 914.1 717 69.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.2e-262 909.1 718 69.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 9.1e-261 903.7 715 68.7
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 9.1e-261 903.7 717 67.1
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 1.2e-260 903.3 717 68.8
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 4.5e-260 901.4 718 68.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 7.7e-260 900.6 717 68.8
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 1.3e-259 899.8 713 68.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.3e-259 899.0 714 67.8
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 3.8e-259 898.3 710 68.7
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 6.6e-259 897.5 710 68.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 6.6e-259 897.5 722 67.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-258 896.0 717 68.6
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 2.5e-258 895.6 717 68.2
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 3.3e-258 895.2 714 68.1
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 5.6e-258 894.4 719 67.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 9.5e-258 893.6 710 68.7
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 3.6e-257 891.7 714 68.1
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 6.1e-257 891.0 726 67.2
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 6.1e-257 891.0 715 67.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 8.0e-257 890.6 726 67.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 8.0e-257 890.6 716 66.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 1.8e-256 889.4 726 67.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 4.0e-256 888.3 711 67.9
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 4.0e-256 888.3 723 67.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 4.0e-256 888.3 728 66.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 4.0e-256 888.3 717 67.5
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 4.0e-256 888.3 749 66.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 5.2e-256 887.9 714 67.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 5.2e-256 887.9 715 67.4
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 8.9e-256 887.1 719 66.6
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 1.5e-255 886.3 721 66.2
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 1.5e-255 886.3 715 67.4
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 1.5e-255 886.3 727 67.0
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 3.4e-255 885.2 718 67.3
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 4.4e-255 884.8 714 66.2
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 5.7e-255 884.4 723 67.1
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 2.9e-254 882.1 713 67.3
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 8.3e-254 880.6 716 66.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 1.4e-253 879.8 716 66.6
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 1.8e-253 879.4 717 66.7
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.4e-253 879.0 722 66.5
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 2.4e-253 879.0 714 66.0
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 4.1e-253 878.2 715 65.6
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 5.4e-253 877.9 714 66.2
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 3.5e-252 875.2 716 65.9
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.5e-252 875.2 715 66.6
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 5.9e-252 874.4 719 65.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 7.8e-252 874.0 744 65.3
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 7.8e-252 874.0 714 66.7
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 1.0e-251 873.6 717 66.7
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.3e-251 873.2 732 66.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 2.3e-251 872.5 735 65.7
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 2.9e-251 872.1 726 65.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 2.9e-251 872.1 719 66.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 2.9e-251 872.1 717 66.4
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 3.9e-251 871.7 715 66.4
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 3.9e-251 871.7 719 65.6
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 5.0e-251 871.3 715 64.6
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 8.6e-251 870.5 719 65.6
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 1.9e-250 869.4 715 64.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 1.9e-250 869.4 714 66.0
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 4.3e-250 868.2 705 66.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 4.3e-250 868.2 739 65.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 7.3e-250 867.5 719 65.4
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 2.8e-249 865.5 747 64.3
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 3.6e-249 865.1 719 65.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 1.0e-248 863.6 719 67.3
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 1.8e-248 862.8 722 64.5
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 2.3e-248 862.4 712 65.2
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 5.8e-247 857.8 716 66.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 5.8e-247 857.8 752 64.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 2.2e-246 855.9 718 64.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 2.2e-246 855.9 714 66.8
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 3.7e-246 855.1 719 65.2
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 1.1e-245 853.6 711 66.0
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 1.4e-245 853.2 718 64.3
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 3.2e-245 852.0 717 64.2
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 2.5e-242 842.4 714 65.7
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 5.6e-242 841.3 715 65.5
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 7.3e-242 840.9 717 64.3
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 6.2e-241 837.8 717 64.4
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 3.1e-240 835.5 717 64.0
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 3.1e-240 835.5 712 64.0
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 5.2e-240 834.7 722 63.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 5.2e-240 834.7 717 63.7
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.5e-239 833.2 716 63.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 4.4e-239 831.6 711 65.0
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 9.8e-239 830.5 717 63.2
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.1e-237 827.0 713 62.1
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 3.2e-237 825.5 722 63.3
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 3.2e-237 825.5 718 63.2
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 9.2e-237 823.9 707 64.1
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 2.1e-236 822.8 721 63.7
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 3.0e-235 818.9 721 63.1
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 6.6e-235 817.8 720 63.3
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 2.3e-232 809.3 726 62.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 6.4e-230 801.2 702 63.0
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 1.9e-229 799.7 737 61.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 1.6e-228 796.6 736 61.4
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 6.0e-228 794.7 718 61.3
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 3.3e-226 788.9 716 61.2
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 1.1e-224 783.9 725 62.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 2.6e-223 779.2 718 61.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 3.1e-216 755.7 619 66.4
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 2.1e-204 716.5 714 58.0
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.1e-178 630.9 511 67.9
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 4.3e-178 629.0 526 66.5
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 6.1e-172 608.6 494 67.6
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.1e-162 577.8 492 63.8
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 3.3e-162 576.2 514 63.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 4.7e-156 555.8 495 62.2
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 1.4e-155 554.3 511 62.6
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.8e-150 536.2 701 47.9
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 8.3e-145 518.5 712 46.6
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.6e-132 477.6 483 59.4
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.7e-129 467.6 737 41.2
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 3.4e-122 443.4 708 40.8
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 6.8e-115 419.1 355 66.2
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-112 411.8 283 74.9
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.5e-101 374.8 708 36.0
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 6.5e-73 279.6 205 67.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 3.2e-64 250.8 187 66.3
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.5e-61 241.9 258 56.6
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.6e-61 241.1 253 56.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.3e-54 218.0 188 63.3
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 8.2e-44 183.0 148 66.9
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.7e-42 176.4 906 26.2
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.8e-36 157.1 86 86.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.4e-27 128.3 164 47.6
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.2e-21 109.4 83 67.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.4e-19 102.4 93 59.1
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.2e-13 82.8 41 87.8
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.4e-11 75.9 112 45.5
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 3.0e-09 68.2 78 47.4


User provided reference genes

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