Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.7e-75 286.2 174 100.0
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.4e-40 170.2 180 58.3
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.3e-40 169.5 179 57.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 6.7e-40 167.9 179 62.0
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.2e-39 167.2 188 58.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.2e-39 167.2 192 59.4
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.2e-39 167.2 198 52.5
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.5e-39 166.8 183 55.7
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.3e-38 163.7 179 59.2
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.8e-38 162.5 174 62.1
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.8e-38 162.5 178 59.6
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.8e-38 161.8 177 56.5
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 6.3e-38 161.4 174 61.5
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 6.3e-38 161.4 186 60.8
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 6.3e-38 161.4 176 60.8
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.1e-37 160.6 177 54.2
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.4e-37 160.2 187 53.5
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.4e-37 160.2 176 54.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.8e-37 159.8 185 54.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 3.1e-37 159.1 179 62.6
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 4.1e-37 158.7 182 62.1
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.3e-37 158.3 201 56.2
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 7.0e-37 157.9 177 61.6
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 7.0e-37 157.9 201 56.2
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 7.0e-37 157.9 178 59.6
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 9.1e-37 157.5 182 61.5
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 9.1e-37 157.5 199 52.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 9.1e-37 157.5 181 54.7
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.2e-36 157.1 175 61.7
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.2e-36 157.1 187 58.8
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.2e-36 157.1 151 60.9
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.6e-36 156.8 179 59.8
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.0e-36 156.4 156 62.8
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.7e-36 156.0 176 59.1
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.7e-36 156.0 181 58.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.7e-36 156.0 175 60.6
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.7e-36 156.0 175 60.6
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.7e-36 156.0 180 54.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 4.5e-36 155.2 176 61.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.5e-36 155.2 180 58.9
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 5.9e-36 154.8 136 60.3
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 5.9e-36 154.8 186 64.0
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.9e-36 154.8 138 68.1
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 5.9e-36 154.8 191 59.2
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.9e-36 154.8 181 56.4
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 5.9e-36 154.8 175 57.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 7.7e-36 154.5 195 59.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.7e-36 154.5 178 52.2
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 7.7e-36 154.5 181 56.9
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 7.7e-36 154.5 181 58.0
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.3e-35 153.7 195 58.5
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.3e-35 153.7 168 57.1
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.3e-35 153.7 180 55.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-35 153.7 191 57.6
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.7e-35 153.3 195 53.8
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.2e-35 152.9 176 59.7
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.2e-35 152.9 182 53.8
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.2e-35 152.9 181 49.7
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.9e-35 152.5 135 64.4
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 5.0e-35 151.8 135 68.9
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.0e-35 151.8 174 55.7
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.0e-35 151.8 164 56.1
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 6.5e-35 151.4 141 66.7
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 6.5e-35 151.4 195 55.4
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 8.5e-35 151.0 148 62.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.1e-34 150.6 176 55.7
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.5e-34 150.2 182 52.7
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.5e-34 150.2 191 56.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.9e-34 149.8 168 61.9
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.9e-34 149.8 174 56.3
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.9e-34 149.8 174 54.6
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 2.5e-34 149.4 176 60.2
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 2.5e-34 149.4 88 81.8
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.2e-34 149.1 142 64.8
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 5.5e-34 148.3 182 57.7
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 5.5e-34 148.3 181 58.6
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 9.4e-34 147.5 189 51.3
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 9.4e-34 147.5 189 56.6
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-33 147.1 190 56.8
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.2e-33 147.1 199 49.2
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.6e-33 146.7 188 57.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.6e-33 146.7 191 56.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.1e-33 146.4 203 51.7
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.1e-33 146.4 198 52.5
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.1e-33 146.4 168 59.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.7e-33 146.0 177 58.8
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.7e-33 146.0 82 85.4
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.7e-33 146.0 191 57.1
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.6e-33 145.6 176 55.7
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 8.0e-33 144.4 189 54.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-32 144.1 142 63.4
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.0e-32 144.1 174 55.2
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.4e-32 143.7 181 55.8
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.4e-32 143.7 180 58.9
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-32 143.7 177 53.1
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.4e-32 143.7 205 47.8
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.8e-32 143.3 196 54.6
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.8e-32 143.3 180 56.7
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.3e-32 142.9 184 58.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 3.0e-32 142.5 183 53.6
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 4.0e-32 142.1 186 55.4
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.0e-32 142.1 142 62.7
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.8e-32 141.4 190 53.2
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 6.8e-32 141.4 181 53.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 8.8e-32 141.0 189 53.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.2e-31 140.6 180 56.7
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.5e-31 140.2 192 52.1
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.5e-31 140.2 194 51.0
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.6e-31 139.4 168 59.5
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.4e-31 139.0 195 52.3
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 4.4e-31 138.7 187 54.0
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 4.4e-31 138.7 172 55.8
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 4.4e-31 138.7 201 53.7
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 5.7e-31 138.3 137 61.3
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 9.8e-31 137.5 189 55.6
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 9.8e-31 137.5 199 46.7
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.2e-30 136.3 193 54.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.1e-29 134.0 90 72.2
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.4e-29 133.7 193 52.3
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.4e-29 133.7 174 60.9
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.8e-29 133.3 186 54.8
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 9.1e-29 131.0 69 87.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.5e-28 128.6 70 85.7
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 5.9e-28 128.3 220 47.3
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 5.0e-27 125.2 120 55.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.1e-26 124.0 75 78.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 5.2e-24 115.2 160 51.2
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.3e-22 110.5 85 65.9
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.4e-21 106.3 187 46.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 2.9e-19 99.4 142 43.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.9e-18 96.7 91 53.8
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 7.3e-18 94.7 112 50.0
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 9.5e-18 94.4 64 75.0
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.1e-17 93.2 185 42.7
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 4.0e-16 89.0 107 51.4
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 8.9e-16 87.8 80 51.2
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 4.4e-15 85.5 145 56.6
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.9e-14 82.8 139 48.9
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 9.2e-13 77.8 108 57.4
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.3e-11 73.2 45 73.3
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 5.6e-10 68.6 67 50.7
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 7.3e-10 68.2 144 45.8
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 4.0e-08 62.4 39 69.2
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 7.5e-07 58.2 169 38.5
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.2e-06 56.6 130 43.8


User provided reference genes

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