Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 0.0e+00 1367.8 677 100.0
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.9e-292 1008.8 668 74.6
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.1e-291 1005.4 668 73.8
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.5e-281 972.6 671 71.4
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 8.4e-280 966.8 668 71.1
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 7.1e-279 963.8 667 70.9
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 2.7e-278 961.8 668 70.2
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 4.6e-278 961.1 668 71.0
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 4.6e-278 961.1 680 69.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 5.1e-277 957.6 668 70.5
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 1.1e-276 956.4 668 69.5
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 3.7e-275 951.4 671 71.4
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 3.8e-272 941.4 675 68.7
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 6.5e-272 940.6 671 68.4
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 1.1e-271 939.9 668 69.3
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 3.2e-271 938.3 668 69.3
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 1.2e-270 936.4 675 68.3
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 2.7e-270 935.3 671 68.1
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 7.9e-270 933.7 668 68.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 2.3e-269 932.2 675 68.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 3.9e-269 931.4 671 67.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 3.9e-269 931.4 668 69.0
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 8.7e-269 930.2 668 68.7
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.1e-268 929.9 675 67.4
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.5e-268 928.7 678 68.0
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 3.3e-268 928.3 677 66.9
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 5.7e-268 927.5 668 67.4
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.3e-267 926.4 669 68.6
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 2.8e-267 925.2 679 66.3
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 2.8e-267 925.2 668 68.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 3.7e-267 924.9 670 67.3
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 4.8e-267 924.5 675 68.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 8.2e-267 923.7 668 68.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 1.1e-266 923.3 685 67.4
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 3.1e-266 921.8 668 67.7
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 1.5e-265 919.5 668 68.0
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 1.5e-265 919.5 673 67.0
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 5.9e-265 917.5 669 67.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 7.6e-265 917.1 669 67.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 2.9e-264 915.2 671 66.8
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 5.0e-264 914.4 680 66.2
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 8.5e-264 913.7 668 67.5
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.9e-263 912.5 669 66.8
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 2.5e-263 912.1 668 68.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 2.5e-263 912.1 671 67.1
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 4.2e-263 911.4 671 66.3
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 5.5e-263 911.0 684 65.9
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.6e-262 909.4 668 67.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 2.7e-262 908.7 668 67.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 4.6e-262 907.9 668 68.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 4.6e-262 907.9 681 66.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 6.1e-262 907.5 675 66.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.9e-261 904.8 676 66.9
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 3.9e-261 904.8 676 66.9
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 1.1e-260 903.3 676 66.3
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 2.5e-260 902.1 669 66.8
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 2.5e-260 902.1 671 66.2
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 7.4e-260 900.6 668 64.7
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 1.3e-259 899.8 668 67.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 8.2e-259 897.1 674 65.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 5.3e-258 894.4 668 64.1
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 5.3e-258 894.4 673 66.6
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 6.9e-258 894.0 685 65.4
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 9.1e-258 893.6 677 65.4
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.9e-256 888.6 670 65.5
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 2.9e-256 888.6 673 65.7
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 6.5e-256 887.5 668 64.8
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 2.5e-255 885.6 668 64.5
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-253 880.2 668 65.7
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 1.1e-252 876.7 700 63.9
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 3.7e-251 871.7 725 60.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.1e-250 870.2 668 64.4
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 2.2e-248 862.4 675 63.7
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 8.5e-248 860.5 668 63.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 1.9e-247 859.4 669 64.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.2e-246 856.7 668 63.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 2.1e-246 855.9 668 64.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 2.1e-246 855.9 669 63.8
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.9e-245 851.7 668 63.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 3.9e-245 851.7 668 62.7
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 3.9e-245 851.7 668 62.7
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 3.3e-244 848.6 669 62.8
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 3.3e-244 848.6 669 62.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 1.7e-243 846.3 812 55.5
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.2e-243 845.9 668 63.0
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 6.3e-243 844.3 668 63.9
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 5.3e-242 841.3 626 66.5
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 2.6e-241 839.0 669 62.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.6e-238 829.7 669 62.2
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 4.8e-235 818.1 679 58.9
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 4.1e-234 815.1 675 59.7
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 9.4e-231 803.9 679 58.9
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 3.6e-230 802.0 668 60.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 1.3e-227 793.5 682 57.9
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 3.4e-220 768.8 698 58.3
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 4.3e-215 751.9 679 58.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 8.3e-211 737.6 531 68.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 3.5e-201 705.7 668 55.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.2e-198 697.2 704 53.1
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 5.2e-197 691.8 459 72.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 5.2e-197 691.8 459 72.3
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.5e-180 637.1 415 72.8
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.0e-180 636.7 590 54.6
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 8.4e-179 631.3 459 66.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 3.6e-174 615.9 684 46.2
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 6.2e-166 588.6 407 67.6
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 1.7e-163 580.5 525 58.5
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.2e-161 574.3 1080 35.5
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 2.7e-161 573.2 536 57.1
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.0e-160 569.7 382 70.4
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.9e-159 567.0 697 44.3
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.1e-157 561.2 703 43.5
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 5.5e-154 548.9 668 42.4
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 8.5e-139 498.4 653 40.1
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 1.1e-125 454.9 293 72.7
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.5e-122 443.7 451 52.8
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 9.8e-95 352.1 228 71.5
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 2.4e-77 294.3 325 49.5
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.6e-57 228.4 213 55.4
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 2.1e-57 228.0 169 63.3
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.0e-56 223.8 186 57.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.6e-55 221.1 213 54.9
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.4e-53 214.5 819 25.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.2e-53 214.2 291 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.2e-52 212.2 313 37.7
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.6e-44 185.3 662 23.6
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 4.6e-44 183.7 453 28.7
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.3e-43 181.4 250 44.4
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 6.1e-36 156.8 112 64.3
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.3e-30 139.0 189 43.4
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.9e-24 116.7 85 62.4
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.2e-21 106.7 129 45.0
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.6e-20 105.5 74 67.6
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.8e-19 102.1 65 69.2
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 3.3e-18 97.8 205 34.6
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 9.7e-18 96.3 74 64.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.7e-17 95.5 125 44.0
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 3.1e-16 91.3 77 62.3
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.1e-16 90.9 67 62.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 7.7e-15 86.7 95 51.6
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 7.7e-15 86.7 78 57.7
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.2e-13 81.3 287 24.0
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.0e-11 76.3 45 75.6
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.3e-11 75.1 80 56.2
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 8.8e-11 73.2 56 60.7
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 4.4e-10 70.9 63 54.0
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.5e-07 61.2 49 63.3
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 5.9e-07 60.5 74 50.0
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.2e-06 58.5 43 65.1
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 6.5e-06 57.0 41 68.3


User provided reference genes

Program Settings