Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 0.0e+00 3620.9 1861 100.0
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 0.0e+00 3046.9 1835 87.2
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1879.4 1907 54.6
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1842.0 1918 53.5
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1834.7 1924 53.7
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1800.4 1906 52.8
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 0.0e+00 1758.0 1914 52.3
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 0.0e+00 1739.5 1912 51.4
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 0.0e+00 1734.9 1921 50.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1729.5 1916 50.2
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1726.1 1916 50.8
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1725.7 1921 51.0
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1725.3 1917 50.3
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 0.0e+00 1724.1 1923 50.1
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1723.4 1916 51.4
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 0.0e+00 1718.7 1900 50.1
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1717.6 1916 50.8
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1712.2 1922 50.6
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1711.0 1913 50.2
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1706.8 1913 50.1
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1706.4 1921 50.2
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1704.9 1911 50.9
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1703.3 1913 50.2
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 0.0e+00 1701.4 1921 50.2
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1701.0 1914 50.0
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 0.0e+00 1692.2 1920 50.5
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 0.0e+00 1692.2 1899 50.8
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1691.0 1922 50.8
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1682.9 1920 50.5
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 0.0e+00 1678.3 1920 49.4
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1676.4 1913 49.1
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1672.9 1851 51.6
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 0.0e+00 1669.1 1906 49.4
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1667.9 1912 49.7
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1662.9 1925 49.8
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 0.0e+00 1659.0 1912 49.5
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1656.0 1910 49.4
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1653.3 1910 49.4
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 0.0e+00 1652.5 1912 48.7
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1652.5 1912 48.7
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1652.1 1914 48.9
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1646.7 1918 48.7
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1646.3 1895 49.7
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 0.0e+00 1637.9 1917 48.3
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 0.0e+00 1635.2 1917 48.3
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1633.6 1890 49.3
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1631.3 1942 49.3
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1629.0 1911 48.3
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1629.0 1901 48.9
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1628.2 1912 48.4
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1627.1 1903 49.0
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1626.3 1914 48.4
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1625.1 1897 49.3
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1624.0 1892 49.2
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1623.2 1868 49.5
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 0.0e+00 1621.3 1915 48.5
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1615.5 2003 48.3
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1615.1 1919 48.7
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 0.0e+00 1614.7 1904 48.8
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1612.0 1901 48.5
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1609.3 1911 48.3
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 0.0e+00 1608.6 1922 49.2
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1607.8 1897 48.0
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1607.4 1918 48.3
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1604.0 1910 48.0
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1602.4 1897 47.9
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1602.4 1912 48.5
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1602.4 1896 48.6
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1600.5 1897 48.2
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1600.1 1918 47.6
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1598.9 1893 49.0
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1598.6 1898 48.5
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 0.0e+00 1596.3 1887 48.9
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 0.0e+00 1592.0 1919 48.0
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 0.0e+00 1590.5 1912 48.1
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 0.0e+00 1586.2 1918 47.3
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1582.0 1906 47.1
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1581.2 1911 47.3
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1575.1 1939 48.7
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1571.2 1895 48.1
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 0.0e+00 1568.1 1917 47.8
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 0.0e+00 1565.8 1909 46.8
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1560.4 1646 51.0
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 0.0e+00 1558.5 1912 47.2
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 0.0e+00 1548.1 1886 47.7
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 0.0e+00 1547.3 1919 46.7
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 0.0e+00 1545.0 1912 47.3
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1544.6 1915 46.7
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 0.0e+00 1544.3 1661 51.0
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1541.9 1914 46.4
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1540.8 1922 46.8
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1538.9 1902 46.8
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1534.6 1916 46.9
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 0.0e+00 1533.5 1934 46.9
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1528.5 1924 47.3
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1526.1 1915 46.2
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1526.1 1915 46.2
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1523.5 1911 46.2
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1523.5 1911 46.2
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 0.0e+00 1523.5 1918 46.8
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1520.4 1908 45.5
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1520.4 1911 46.2
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 0.0e+00 1518.8 1918 46.6
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 0.0e+00 1517.3 1922 46.2
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1516.5 1770 48.6
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 0.0e+00 1514.6 1914 46.2
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1508.8 1894 46.1
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 0.0e+00 1505.7 1917 46.4
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1501.5 1921 46.0
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1493.8 1912 45.1
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 0.0e+00 1491.5 1925 45.9
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1486.1 1905 46.1
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 0.0e+00 1485.7 1902 45.6
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1472.2 1892 45.8
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 1470.3 1919 45.9
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 0.0e+00 1462.2 1899 45.8
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 0.0e+00 1461.0 1915 45.4
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 0.0e+00 1459.5 1910 45.4
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1451.4 1917 45.2
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1450.3 1914 45.3
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1450.3 1915 44.8
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1450.3 1914 45.3
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1447.6 1915 44.8
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1442.6 1893 45.6
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1439.1 1818 46.3
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 1431.4 1884 45.4
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1426.4 1883 44.8
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 1423.3 1901 44.9
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1416.0 1898 44.2
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1407.9 1896 44.8
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1406.7 1910 44.0
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1404.4 1901 43.9
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1395.6 1863 44.4
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 0.0e+00 1357.8 1519 49.1
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 0.0e+00 1294.3 1879 41.6
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 0.0e+00 1286.9 1952 41.3
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 0.0e+00 1244.6 1778 42.0
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 0.0e+00 1090.5 1950 38.2
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 5.1e-311 1072.0 1966 38.0
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.2e-288 997.7 1956 36.4
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 9.1e-284 981.5 1947 36.1
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 5.9e-283 978.8 1105 50.7
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 4.7e-264 916.0 1905 36.1
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 7.2e-257 892.1 936 54.5
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 5.8e-246 855.9 1357 40.7
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 1.4e-215 755.0 956 45.8
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 1.3e-194 685.3 932 43.9
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 2.9e-157 561.2 748 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 7.0e-151 540.0 1309 32.2
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 3.8e-141 507.7 757 40.4
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.5e-140 505.0 698 45.1
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 3.1e-122 444.9 515 48.9
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 1.5e-113 416.0 783 36.3
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 1.1e-98 366.7 2085 25.4
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 1.9e-47 196.4 310 41.6
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 7.4e-44 184.5 221 50.2
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.6e-41 176.0 267 42.3
Psat4g169200 Pisum sativum HOM05D003460 ORTHO05D004277 9.4e-39 167.5 306 37.3
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.7e-35 156.8 481 29.1
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 1.1e-34 154.1 298 38.6
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 2.0e-33 149.8 272 40.1
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 2.9e-32 146.0 326 33.1
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 3.7e-27 129.0 116 57.8
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 2.0e-25 123.2 140 50.0
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 4.0e-21 109.0 107 61.7
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 1.2e-14 87.4 109 48.6
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 6.2e-14 85.1 134 44.8
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 1.7e-11 77.0 135 38.5
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 3.7e-11 75.9 143 37.1
SHI13446 Sapria himalayana HOM05D003460 ORTHO05D030575 6.4e-11 75.1 134 39.6
HPP92_028274 Vanilla planifolia HOM05D003460 ORTHO05D030575 6.4e-11 75.1 66 53.0
TPR.G30982 Trifolium pratense HOM05D003460 ORTHO05D004277 7.0e-10 71.6 60 60.0
VMungo0540G1705 Vigna mungo HOM05D003460 ORTHO05D030575 7.0e-10 71.6 100 48.0
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 8.6e-08 64.7 50 56.0
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 4.3e-07 62.4 90 43.3


User provided reference genes

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